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Bacteria can spontaneously develop collective motions by aligning their motions in dense systems. Here, we show that bacteria can also respond collectively to an alternating electrical field and form dynamic clusters oscillating at the same…

Soft Condensed Matter · Physics 2022-10-11 Mei Mei Bao , Isaiah Eze Igwe , Kang Chen , Tian Hui Zhang

We aim to understand grokking, a phenomenon where models generalize long after overfitting their training set. We present both a microscopic analysis anchored by an effective theory and a macroscopic analysis of phase diagrams describing…

Machine Learning · Computer Science 2022-10-17 Ziming Liu , Ouail Kitouni , Niklas Nolte , Eric J. Michaud , Max Tegmark , Mike Williams

Collective behavior in biological systems was first captured by the Vicsek model, in which particles align their velocities in the average direction of neighbors, leading to coherent motion and showing an order-disorder transition. However,…

Soft Condensed Matter · Physics 2026-02-26 Mohit Gaur , Arnab Saha , Subhajit Paul

All organisms make temporal predictions, and their evolutionary fitness level depends on the accuracy of these predictions. In the context of visual perception, the motions of both the observer and objects in the scene structure the…

Machine Learning · Statistics 2024-11-05 Pierre-Étienne H. Fiquet , Eero P. Simoncelli

Learning is based on synaptic plasticity, which affects and is driven by neural activity. Because pre- and postsynaptic spiking activity is shaped by randomness, the synaptic weights follow a stochastic process, requiring a probabilistic…

Neurons and Cognition · Quantitative Biology 2026-01-14 Jakob Stubenrauch , Naomi Auer , Richard Kempter , Benjamin Lindner

Flocking is a paradigmatic example of collective animal behaviour, where decentralized interaction rules give rise to a globally ordered state. In the emergence of order out of self-organization we find similarities between biological…

Populations and Evolution · Quantitative Biology 2013-02-14 Andrea Cavagna , Silvio M. Duarte Queiros , Irene Giardina , Fabio Stefanini , Massimiliano Viale

Reproducing realistic collective behaviors presents a captivating yet formidable challenge. Traditional rule-based methods rely on hand-crafted principles, limiting motion diversity and realism in generated collective behaviors. Recent…

Graphics · Computer Science 2025-04-02 Yifan Wu , Zhiyang Dou , Yuko Ishiwaka , Shun Ogawa , Yuke Lou , Wenping Wang , Lingjie Liu , Taku Komura

Fish, birds, insects and robots frequently swim or fly in groups. During their 3 dimensional collective motion, these agents do not stop, they avoid collisions by strong short-range repulsion, and achieve group cohesion by weak long-range…

Soft Condensed Matter · Physics 2018-07-04 Illes J. Farkas , Shuo-Hong Wang

We present a quantitative continuum theory of ``flocking'': the collective coherent motion of large numbers of self-propelled organisms. Our model predicts the existence of an ``ordered phase'' of flocks, in which all members of the flock…

Statistical Mechanics · Physics 2009-10-31 John Toner , Yuhai Tu

This paper shows that generative diffusion processes converge to associative memory systems at vanishing noise levels and characterizes the stability, robustness, memorization, and generation dynamics of both model classes. Morse-Smale…

Machine Learning · Computer Science 2025-11-18 Joshua Hess , Quaid Morris

We review the mathematical formalism underlying the modelling of stochasticity in biological systems. Beginning with a description of the system in terms of its basic constituents, we derive the mesoscopic equations governing the dynamics…

Populations and Evolution · Quantitative Biology 2012-11-05 Alan J. McKane , Tommaso Biancalani , Tim Rogers

Living organisms process information to interact and adapt to their changing environment with the goal of finding food, mates or averting hazards. The structure of their niche has profound repercussions by both selecting their internal…

Physics and Society · Physics 2017-06-07 Hannes Hornischer , Stephan Herminghaus , Marco G. Mazza

Learning from web data has attracted lots of research interest in recent years. However, crawled web images usually have two types of noises, label noise and background noise, which induce extra difficulties in utilizing them effectively.…

Computer Vision and Pattern Recognition · Computer Science 2020-03-12 Yi Tu , Li Niu , Junjie Chen , Dawei Cheng , Liqing Zhang

Mathematical models for systems of interacting agents using simple local rules have been proposed and shown to exhibit emergent swarming behavior. Most of these models are constructed by intuition or manual observations of real phenomena,…

Adaptation and Self-Organizing Systems · Physics 2015-06-04 Graciano Dieck Kattas , Xiao-ke Xu , Michael Small

People exhibit a tendency to generalize a novel noun to the basic-level in a hierarchical taxonomy -- a cognitively salient category such as "dog" -- with the degree of generalization depending on the number and type of exemplars. Recently,…

Computation and Language · Computer Science 2016-02-19 Erin Grant , Aida Nematzadeh , Suzanne Stevenson

Memory can remarkably modify the collective behaviors of active particles. We show that in a micellar fluid, Quincke particles driven by a square-wave electric field exhibit a frequency-dependent memory. Upon increasing the frequency, a…

Soft Condensed Matter · Physics 2023-10-20 Yang Yang , Meng Fei Zhang , Lailai Zhu , Tian Hui Zhang

In the age of technology, individuals accelerate their biased gathering of information which in turn leads to a population becoming extreme and more polarized. Here we study a partial differential equation model for opinion dynamics that…

Physics and Society · Physics 2024-02-08 Christian Koertje , Hiroki Sayama

Living objects are able to consume chemical energy and process information independently from others. However, living objects can coordinate to form ordered groups such as schools of fish. This work considers these complex groups as living…

Systems of motile microorganisms exhibit a multitude of collective phenomena, including motility-induced phase separation and turbulence. Sensing of the environment and adaptation of movement plays an essential role in the emergent…

Soft Condensed Matter · Physics 2024-06-26 Segun Goh , Elmar Westphal , Roland G. Winkler , Gerhard Gompper

Flocking, as paradigmatically exemplified by birds, is the coherent collective motion of active agents. As originally conceived, flocking emerges through alignment interactions between the agents. Here, we report that flocking can also…

Soft Condensed Matter · Physics 2024-07-16 Suchismita Das , Matteo Ciarchi , Ziqi Zhou , Jing Yan , Jie Zhang , Ricard Alert