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Computational notebooks have become the preferred tool of choice for data scientists and practitioners to perform analyses and share results. Notebooks uniquely combine scripts with documentation. With the emergence of generative AI (GenAI)…

Software Engineering · Computer Science 2025-11-03 Tasha Settewong , Youmei Fan , Raula Gaikovina Kula , Kenichi Matsumoto

Interactive notebooks are a precious tool for creating graphical user interfaces and teaching materials. Python and Jupyter are becoming increasingly popular in this context, with Jupyter widgets at the core of the interactive…

Physics Education · Physics 2024-09-02 Dou Du , Taylor J. Baird , Kristjan Eimre , Sara Bonella , Giovanni Pizzi

We present HaPy-Bug, a curated dataset of 793 Python source code commits associated with bug fixes, with each line of code annotated by three domain experts. The annotations offer insights into the purpose of modified files, changes at the…

Context: Change mining enables organizations to understand the changes that occurred in their business processes. This allows them to enhance their business processes and adapt to dynamic environments. Therefore, change mining is becoming a…

Software Engineering · Computer Science 2025-09-03 Arash Yadegari Ghahderijani , Hande Naz Turgay , Dimka Karastoyanova

We aim to increase the flexibility at which a data worker can choose the right tool for the job, regardless of whether the tool is a code library or an interactive graphical user interface (GUI). To achieve this flexibility, we extend…

Human-Computer Interaction · Computer Science 2020-09-23 Mary Beth Kery , Donghao Ren , Fred Hohman , Dominik Moritz , Kanit Wongsuphasawat , Kayur Patel

The continuous evolution of software projects necessitates the implementation of changes to enhance performance and reduce defects. This research explores effective strategies for learning and implementing useful changes in software…

Software Engineering · Computer Science 2025-04-18 Kartik Gupta

Code search is an important and frequent activity for developers using computational notebooks (e.g., Jupyter). The flexibility of notebooks brings challenges for effective code search, where classic search interfaces for traditional…

Human-Computer Interaction · Computer Science 2021-02-03 Xingjun Li , Yuanxin Wang , Hong Wang , Yang Wang , Jian Zhao

In experimental physics, lab notebooks play an essential role in the research process. For all of the ubiquity of lab notebooks, little formal attention has been paid to addressing what is considered `best practice' for scientific…

Physics Education · Physics 2016-12-21 Jacob T. Stanley , H. J. Lewandowski

Deep learning (DL) techniques have achieved significant success in various software engineering tasks (e.g., code completion by Copilot). However, DL systems are prone to bugs from many sources, including training data. Existing literature…

Software Engineering · Computer Science 2025-08-12 Mehil B Shah , Mohammad Masudur Rahman , Foutse Khomh

Writing is a complex process at the center of much of modern human activity. Despite it appears to be a linear process, writing conceals many highly non-linear processes. Previous research has focused on three phases of writing: planning,…

Computation and Language · Computer Science 2024-01-25 Donald Ruggiero Lo Sardo , Pietro Gravino , Christine Cuskley , Vittorio Loreto

Data from software repositories have become an important foundation for the empirical study of software engineering processes. A recurring theme in the repository mining literature is the inference of developer networks capturing e.g.…

Software Engineering · Computer Science 2019-11-22 Christoph Gote , Ingo Scholtes , Frank Schweitzer

Software is constantly changing, requiring developers to perform several derived tasks in a timely manner, such as writing a description for the intention of the code change, or identifying the defect-prone code changes. Considering that…

Software Engineering · Computer Science 2023-05-19 Bo Lin , Shangwen Wang , Zhongxin Liu , Yepang Liu , Xin Xia , Xiaoguang Mao

The transition from AI/ML models to production-ready AI-based systems is a challenge for both data scientists and software engineers. In this paper, we report the results of a workshop conducted in a consulting company to understand how…

Software Engineering · Computer Science 2021-06-01 Filippo Lanubile , Fabio Calefato , Luigi Quaranta , Maddalena Amoruso , Fabio Fumarola , Michele Filannino

Computational notebooks became indispensable tools for research-related development, offering unprecedented interactivity and flexibility in the development process. However, these benefits come at the cost of reproducibility and an…

Software Engineering · Computer Science 2024-05-06 Konstantin Grotov , Sergey Titov , Yaroslav Zharov , Timofey Bryksin

Machine Learning (ML) code, particularly within notebooks, often exhibits lower quality compared to traditional software. Bad practices arise at three distinct levels: general Python coding conventions, the organizational structure of the…

Software Engineering · Computer Science 2025-09-16 Marius Mignard , Steven Costiou , Nicolas Anquetil , Anne Etien

The way in which data are shared can affect their utility and reusability. Here, we demonstrate how data that we had previously shared in bulk can be mobilized further through a knowledge graph that allows for much more granular exploration…

Computational Engineering, Finance, and Science · Computer Science 2025-01-07 Sheeba Samuel , Daniel Mietchen

Computational notebook software such as Jupyter Notebook is popular for data science tasks. Numerous computational notebooks are available on the Web and reusable; however, searching for computational notebooks manually is a tedious task,…

Information Retrieval · Computer Science 2022-02-01 Misato Horiuchi , Yuya Sasaki , Chuan Xiao , Makoto Onizuka

Complex software systems evolve frequently, e.g., when introducing new features or fixing bugs during maintenance. However, understanding the impact of such changes on system behavior is often difficult. Many approaches have thus been…

Software Engineering · Computer Science 2020-01-09 Thomas Krismayer , Michael Vierhauser , Rick Rabiser , Paul Grünbacher

Because spreadsheets have a large and growing importance in real-world work, their contents need to be controlled and validated. Generally spreadsheets have been difficult to verify, since data and executable information are stored…

Human-Computer Interaction · Computer Science 2008-07-22 John C. Nash , Neil Smith , Andy Adler

Citing data and software is a means to give scholarly credit and to facilitate access to research objects. Citation principles encourage authors to provide full descriptions of objects, with stable links, in their papers. As Jupyter…

Digital Libraries · Computer Science 2020-04-28 Morgan F. Wofford , Bernadette M. Boscoe , Christine L. Borgman , Irene V. Pasquetto , Milena S. Golshan
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