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Unsupervised graph representation learning aims to learn low-dimensional node embeddings without supervision while preserving graph topological structures and node attributive features. Previous graph neural networks (GNN) require a large…

Machine Learning · Computer Science 2020-09-04 Yanqiao Zhu , Yichen Xu , Feng Yu , Shu Wu , Liang Wang

The recent development of high-throughput sequencing creates a large collection of multi-omics data, which enables researchers to better investigate cancer molecular profiles and cancer taxonomy based on molecular subtypes. Integrating…

Genomics · Quantitative Biology 2024-01-25 Bingjun Li , Sheida Nabavi

We propose a result-level category-specific fusion architecture called ClassWise-CRF. This architecture employs a two-stage process: first, it selects expert networks that perform well in specific categories from a pool of candidate…

Computer Vision and Pattern Recognition · Computer Science 2025-12-30 Qinfeng Zhu , Yunxi Jiang , Lei Fan

The ability to discriminate between generative graph models is critical to understanding complex structural patterns in both synthetic graphs and the real-world structures that they emulate. While Graph Neural Networks (GNNs) have seen…

Machine Learning · Computer Science 2025-12-23 Janek Dyer , Jagdeep Ahluwalia , Javad Zarrin

Most graph kernels are an instance of the class of $\mathcal{R}$-Convolution kernels, which measure the similarity of objects by comparing their substructures. Despite their empirical success, most graph kernels use a naive aggregation of…

Machine Learning · Computer Science 2019-10-31 Matteo Togninalli , Elisabetta Ghisu , Felipe Llinares-López , Bastian Rieck , Karsten Borgwardt

Speech emotion recognition (SER) is an essential part of human-computer interaction. In this paper, we propose an SER network based on a Graph Isomorphism Network with Weighted Multiple Aggregators (WMA-GIN), which can effectively handle…

Audio and Speech Processing · Electrical Eng. & Systems 2022-11-02 Ying Hu , Yuwu Tang , Hao Huang , Liang He

Graph data, also known as complex network data, is omnipresent across various domains and applications. Prior graph neural network models primarily focused on extracting task-specific structural features through supervised learning…

Machine Learning · Computer Science 2024-03-26 Hongyin Zhu

Integration and analysis of multi-omics data provide valuable insights for improving cancer subtype classification. However, such data are inherently heterogeneous, high-dimensional, and exhibit complex intra- and inter-modality…

Quantitative Methods · Quantitative Biology 2026-02-13 Tiantian Yang , Zhiqian Chen

Graph neural networks (GNNs) have received massive attention in the field of machine learning on graphs. Inspired by the success of neural networks, a line of research has been conducted to train GNNs to deal with various tasks, such as…

Machine Learning · Computer Science 2022-04-11 Manh Tuan Do , Noseong Park , Kijung Shin

Graph Neural Networks (GNNs) are a broad class of connectionist models for graph processing. Recent studies have shown that GNNs can approximate any function on graphs, modulo the equivalence relation on graphs defined by the…

Machine Learning · Computer Science 2024-08-21 Giuseppe Alessio D'Inverno , Monica Bianchini , Maria Lucia Sampoli , Franco Scarselli

We consider the graph similarity computation (GSC) task based on graph edit distance (GED) estimation. State-of-the-art methods treat GSC as a learning-based prediction task using Graph Neural Networks (GNNs). To capture fine-grained…

Machine Learning · Computer Science 2024-06-24 Wei Zhuo , Guang Tan

Emotion recognition in conversation (ERC) has received increasing attention from researchers due to its wide range of applications.As conversation has a natural graph structure,numerous approaches used to model ERC based on graph…

Artificial Intelligence · Computer Science 2023-09-01 Lin Yuan , Guoheng Huang , Fenghuan Li , Xiaochen Yuan , Chi-Man Pun , Guo Zhong

In this study, we present the Graph Sub-Graph Network (GSN), a novel hybrid image classification model merging the strengths of Convolutional Neural Networks (CNNs) for feature extraction and Graph Neural Networks (GNNs) for structural…

Computer Vision and Pattern Recognition · Computer Science 2024-10-01 Aryan Singh , Pepijn Van de Ven , Ciarán Eising , Patrick Denny

In many real-world contexts, such as social or transport networks, data exhibit both structural connectivity and node-level attributes. For example, roads in a transport network can be characterized not only by their connectivity but also…

Methodology · Statistics 2025-12-18 Ioana Gavra , Ketsia Guichard-Sustowski , Loïc Le Marrec

Graph neural networks (GNNs) have brought revolutionary advancements to the field of link prediction (LP), providing powerful tools for mining potential relationships in graphs. However, existing methods face challenges when dealing with…

Machine Learning · Computer Science 2025-12-30 Huashen Lu , Wensheng Gan , Guoting Chen , Zhichao Huang , Philip S. Yu

Enterprise credit assessment is critical for evaluating financial risk, and Graph Neural Networks (GNNs), with their advanced capability to model inter-entity relationships, are a natural tool to get a deeper understanding of these…

Machine Learning · Computer Science 2024-07-17 Shaopeng Wei , Beni Egressy , Xingyan Chen , Yu Zhao , Fuzhen Zhuang , Roger Wattenhofer , Gang Kou

Graph clustering is essential in graph analysis for revealing structural patterns and node communities. Despite recent advances in self-supervised contrastive learning that have improved clustering via structural and attribute signals,…

Machine Learning · Computer Science 2026-05-28 Lei Zhang , Fubo Sun , Haipeng Yang , Zhong Guan , Likang Wu

We propose a scalable Gromov-Wasserstein learning (S-GWL) method and establish a novel and theoretically-supported paradigm for large-scale graph analysis. The proposed method is based on the fact that Gromov-Wasserstein discrepancy is a…

Machine Learning · Computer Science 2019-10-10 Hongteng Xu , Dixin Luo , Lawrence Carin

To solve the problem that convolutional neural networks (CNNs) are difficult to process non-grid type relational data like graphs, Kipf et al. proposed a graph convolutional neural network (GCN). The core idea of the GCN is to perform…

Machine Learning · Computer Science 2019-04-17 Shangsheng Xie , Mingming Lu

We propose a novel technique to enhance Knowledge Graph Reasoning by combining Graph Convolution Neural Network (GCN) with the Attention Mechanism. This approach utilizes the Attention Mechanism to examine the relationships between entities…

Information Retrieval · Computer Science 2025-03-24 Meera Gupta , Ravi Khanna , Divya Choudhary , Nandini Rao