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Blood vessel networks, represented as 3D graphs, help predict disease biomarkers, simulate blood flow, and aid in synthetic image generation, relevant in both clinical and pre-clinical settings. However, generating realistic vessel graphs…

Computer Vision and Pattern Recognition · Computer Science 2024-07-09 Chinmay Prabhakar , Suprosanna Shit , Fabio Musio , Kaiyuan Yang , Tamaz Amiranashvili , Johannes C. Paetzold , Hongwei Bran Li , Bjoern Menze

In this work, we introduce an algorithmic approach to generate microvascular networks starting from larger vessels that can be reconstructed without noticeable segmentation errors. Contrary to larger vessels, the reconstruction of…

Computational Engineering, Finance, and Science · Computer Science 2020-07-10 Tobias Köppl , Ettore Vidotto , Barbara Wohlmuth

Blood vessel segmentation and -tracing are essential tasks in many medical imaging applications. Although numerous methods exist, the prevailing segment-then-fix paradigm is fundamentally limited regarding its suitability for modeling the…

Computer Vision and Pattern Recognition · Computer Science 2026-05-04 Rajalakshmi Palaniappan , Christoph Karg , Nemesio Navarro-Arambula , Peter Hirsch , Kristin Kraeker , Lisa Mais , Dagmar Kainmueller

We present a data-driven generative framework for synthesizing blood vessel 3D geometry. This is a challenging task due to the complexity of vascular systems, which are highly variating in shape, size, and structure. Existing model-based…

Computer Vision and Pattern Recognition · Computer Science 2025-05-20 Paula Feldman , Miguel Fainstein , Viviana Siless , Claudio Delrieux , Emmanuel Iarussi

Delineating 3D blood vessels is essential for clinical diagnosis and treatment, however, is challenging due to complex structure variations and varied imaging conditions. Supervised deep learning has demonstrated its superior capacity in…

Image and Video Processing · Electrical Eng. & Systems 2023-02-08 Huai Chen , Xiuying Wang , Lisheng Wang

In this paper, we propose a method for generating a hierarchical, volumetric topological map from 3D point clouds. There are three basic hierarchical levels in our map: $storey - region - volume$. The advantages of our method are reflected…

Robotics · Computer Science 2021-11-25 Zhenpeng He , Hao Sun , Jiawei Hou , Yajun Ha , Sören Schwertfeger

In this paper, a hierarchical image matting model is proposed to extract blood vessels from fundus images. More specifically, a hierarchical strategy utilizing the continuity and extendibility of retinal blood vessels is integrated into the…

Computer Vision and Pattern Recognition · Computer Science 2017-10-10 Zhun Fan , Jiewei Lu , Wenji Li , Caimin Wei , Han Huang , Xinye Cai , Xinjian Chen

Anatomical trees are critical for clinical diagnosis and treatment planning, yet their complex and diverse geometry make accurate representation a significant challenge. Motivated by the latest advances in large language models, we…

Computer Vision and Pattern Recognition · Computer Science 2025-06-24 Paula Feldman , Martin Sinnona , Claudio Delrieux , Viviana Siless , Emmanuel Iarussi

We propose a method for converting geometric shapes into hierarchically segmented parts with part labels. Our key idea is to train category-specific models from the scene graphs and part names that accompany 3D shapes in public…

Graphics · Computer Science 2017-05-05 Li Yi , Leonidas Guibas , Aaron Hertzmann , Vladimir G. Kim , Hao Su , Ersin Yumer

Accurate analysis and modeling of renal functions require a precise segmentation of the renal blood vessels. Micro-CT scans provide image data at higher resolutions, making more small vessels near the renal cortex visible. Although…

Image and Video Processing · Electrical Eng. & Systems 2023-05-29 Peidi Xu , Olga Sosnovtseva , Charlotte Mehlin Sørensen , Kenny Erleben , Sune Darkner

3D printing has been widely adopted for clinical decision making and interventional planning of Congenital heart disease (CHD), while whole heart and great vessel segmentation is the most significant but time-consuming step in the model…

Image and Video Processing · Electrical Eng. & Systems 2019-07-15 Xiaowei Xu , Tianchen Wang , Dewen Zeng , Yiyu Shi , Qianjun Jia , Haiyun Yuan , Meiping Huang , Jian Zhuang

We introduce a novel framework for learning vector representations of tree-structured geometric data focusing on 3D vascular networks. Our approach employs two sequentially trained Transformer-based autoencoders. In the first stage, the…

Image and Video Processing · Electrical Eng. & Systems 2025-06-16 James Batten , Michiel Schaap , Matthew Sinclair , Ying Bai , Ben Glocker

3D content generation remains a fundamental yet challenging task due to the inherent structural complexity of 3D data. While recent octree-based diffusion models offer a promising balance between efficiency and quality through hierarchical…

Computer Vision and Pattern Recognition · Computer Science 2025-08-18 Xinjie Gao , Bi'an Du , Wei Hu

Blood vessel segmentation is a core task in medical image analysis for the care of vascular diseases and surgical planning, yet the challenges of providing expert vascular annotations pose a major obstacle for the progress of related deep…

Computer Vision and Pattern Recognition · Computer Science 2026-05-28 Erin Rainville , Melissa Ananian , Tristan Mirolla , Hassan Rivaz , Yiming Xiao

Segmenting 3D blood vessels is a critical yet challenging task in medical image analysis. This is due to significant imaging modality-specific variations in artifacts, vascular patterns and scales, signal-to-noise ratios, and background…

Image and Video Processing · Electrical Eng. & Systems 2025-03-18 Bastian Wittmann , Yannick Wattenberg , Tamaz Amiranashvili , Suprosanna Shit , Bjoern Menze

Semantic segmentation of blood vessels is an important task in medical image analysis, but its progress is often hindered by the scarcity of large annotated datasets and the poor generalization of models across different imaging modalities.…

Computer Vision and Pattern Recognition · Computer Science 2025-11-03 Cesar H. Comin , Wesley N. Galvão

3D spatial graphs play a crucial role in biological and clinical research by modeling anatomical networks such as blood vessels,neurons, and airways. However, generating 3D biological graphs while maintaining anatomical validity remains…

Computer Vision and Pattern Recognition · Computer Science 2025-07-08 Chinmay Prabhakar , Suprosanna Shit , Tamaz Amiranashvili , Hongwei Bran Li , Bjoern Menze

Videos can often be created by first outlining a global description of the scene and then adding local details. Inspired by this we propose a hierarchical model for video generation which follows a coarse to fine approach. First our model…

Computer Vision and Pattern Recognition · Computer Science 2021-06-08 Lluis Castrejon , Nicolas Ballas , Aaron Courville

This paper presents a novel latent 3D diffusion model for the generation of neural voxel fields, aiming to achieve accurate part-aware structures. Compared to existing methods, there are two key designs to ensure high-quality and accurate…

Computer Vision and Pattern Recognition · Computer Science 2025-05-05 Yuhang Huang , SHilong Zou , Xinwang Liu , Kai Xu

Personalized 3D vascular models can aid in a range of diagnostic, prognostic, and treatment-planning tasks relevant to cardiovascular disease management. Deep learning provides a means to obtain such models automatically from image data.…

Image and Video Processing · Electrical Eng. & Systems 2024-08-20 Patryk Rygiel , Dieuwertje Alblas , Christoph Brune , Kak Khee Yeung , Jelmer M. Wolterink
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