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Motivated by mutation processes occurring in in-vivo DNA-storage applications, a channel that mutates stored strings by duplicating substrings as well as substituting symbols is studied. Two models of such a channel are considered: one in…

Information Theory · Computer Science 2020-07-01 Yuanyuan Tang , Yonatan Yehezkeally , Moshe Schwartz , Farzad Farnoud

We present the first known efficient decoding algorithm for correcting multiple insertion-deletion errors in Helberg codes and their non-binary generalizations, extending a known algorithm for correcting multiple deletion errors.

Information Theory · Computer Science 2025-08-27 Anthony Segrest , Hieu D. Nguyen

In this paper, for any fixed positive integers $t$ and $q>2$, we construct $q$-ary codes correcting a burst of at most $t$ deletions with redundancy $\log n+8\log\log n+o(\log\log n)+\gamma_{q,t}$ bits and near-linear encoding/decoding…

Information Theory · Computer Science 2024-05-02 Wentu Song , Kui Cai , Tony Q. S. Quek

We study the capacity limits of real-time streaming over burst-erasure channels. A stream of source packets must be sequentially encoded and the resulting channel packets must be transmitted over a two-receiver burst-erasure broadcast…

Information Theory · Computer Science 2016-11-18 Ahmed Badr , Devin Lui , Ashish Khisti

We propose a new class of error correction codes for low-delay streaming communication. We consider an online setup where a source packet arrives at the encoder every $M$ channel uses, and needs to be decoded with a maximum delay of $T$…

Information Theory · Computer Science 2016-11-17 Ahmed Badr , Pratik Patil , Ashish Khisti , Wai-Tian Tan , John Apostolopoulos

One peculiarity with deletion-correcting codes is that perfect $t$-deletion-correcting codes of the same length over the same alphabet can have different numbers of codewords, because the balls of radius $t$ with respect to the…

Information Theory · Computer Science 2010-08-10 Yeow Meng Chee , Gennian Ge , Alan C. H. Ling

This paper proves that any quantum t-deletion-correcting codes also correct a total of t insertion and deletion errors under a certain condition. Here, this condition is that a set of quantum states is defined as a quantum error-correcting…

Information Theory · Computer Science 2026-05-13 Ken Nakamura , Takayuki Nozaki

We develop upper bounds on code size for an independent and identically distributed deletion and insertion channels for a given code length and target frame error probability. The bounds are obtained as a variation of a general converse…

Information Theory · Computer Science 2026-04-14 Ruslan Morozov , Tolga Mete Duman

We introduce synchronization strings as a novel way of efficiently dealing with synchronization errors, i.e., insertions and deletions. Synchronization errors are strictly more general and much harder to deal with than commonly considered…

Information Theory · Computer Science 2017-04-05 Bernhard Haeupler , Amirbehshad Shahrasbi

We construct two-dimensional codes for correcting burst errors using the finite field Fourier transform. The encoding procedure is performed in the transformed domain using the conjugacy property of the finite field Fourier transform. The…

Information Theory · Computer Science 2015-08-04 Shounak Roy , Shayan G. Srinivasa

A single source network is said to be memory-free if all of the internal nodes (those except the source and the sinks) do not employ memory but merely send linear combinations of the symbols received at their incoming edges on their…

Information Theory · Computer Science 2009-09-09 K. Prasad , B. Sundar Rajan

Consider two remote nodes (encoder and decoder), each with a binary sequence. The encoder's sequence $X$ differs from the decoder's sequence $Y$ by a small number of edits (deletions and insertions). The goal is to construct a message $M$,…

Information Theory · Computer Science 2020-10-28 Mahed Abroshan , Ramji Venkataramanan , Albert Guillen i Fabregas

A new channel coding approach was proposed in [1] for random multiple access communication over the discrete-time memoryless channel. The coding approach allows users to choose their communication rates independently without sharing the…

Information Theory · Computer Science 2016-11-15 Zheng Wang , Jie Luo

We study the channel coding problem when errors and uncertainty occur in the encoding process. For simplicity we assume the channel between the encoder and the decoder is perfect. Focusing on linear block codes, we model the encoding…

Information Theory · Computer Science 2013-05-17 Jad Hachem , I-Hsiang Wang , Christina Fragouli , Suhas Diggavi

We study optimal reconstruction codes over the multiple-burst substitution channel. Our main contribution is establishing a trade-off between the error-correction capability of the code, the number of reads used in the reconstruction…

Information Theory · Computer Science 2025-06-17 Wenjun Yu , Yubo Sun , Zixiang Xu , Gennian Ge , Moshe Schwartz

Reconstruction codes are generalizations of error-correcting codes that can correct errors by a given number of noisy reads. The study of such codes was initiated by Levenshtein in 2001 and developed recently due to applications in modern…

Information Theory · Computer Science 2023-02-21 Zuo Ye , Xin Liu , Xiande Zhang , Gennian Ge

This paper tackles two problems that fall under the study of coding for insertions and deletions. These problems are motivated by several applications, among them is reconstructing strands in DNA-based storage systems. Under this paradigm,…

Information Theory · Computer Science 2025-06-23 Omer Sabary , Daniella Bar-Lev , Yotam Gershon , Alexander Yucovich , Eitan Yaakobi

Data synchronization is a fundamental problem with applications in diverse fields such as cloud storage, genomics, and distributed systems. This paper addresses the challenge of synchronizing two files, one of which is a subsequence of the…

Information Theory · Computer Science 2025-12-09 Haolun , Ni , Lev Tauz , Ryan Gabrys , Lara Dolecek

We construct error correcting codes for jointly transmitting a finite set of independent messages to an 'informed receiver' which has prior knowledge of the values of some subset of the messages as side information. The transmitter is…

Information Theory · Computer Science 2016-04-08 Lakshmi Natarajan , Yi Hong , Emanuele Viterbo

We propose a new coding scheme, called the delayed coding (DC) scheme, for channels with insertion, deletion, and substitution (IDS) errors. The proposed scheme employs delayed encoding and non-iterative detection and decoding strategies to…

Information Theory · Computer Science 2022-05-25 Ryo Shibata , Hiroyuki Yashima
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