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We present a comprehensive new framework for handling biologically accurate models of molecular evolution. This model provides a systematic framework for studying models of molecular evolution that implement heterogeneous rates,…

Populations and Evolution · Quantitative Biology 2011-02-10 David Koslicki

Aiming to understand the distribution of fitness levels of individuals in a large population undergoing selection, we study the particle configurations of branching Brownian motion where each particle independently moves as Brownian motion…

Probability · Mathematics 2022-01-25 Jiaqi Liu , Jason Schweinsberg

In this paper, we propose a novel free boundary problem to model the movement of single species with a range boundary. The spatial movement and birth/death processes of the species found within the range boundary are assumed to be governed…

Analysis of PDEs · Mathematics 2022-01-13 Chunxi Feng , Mark A. Lewis , Chuncheng Wang , Hao Wang

The diffusion of finite-size hard-core interacting particles in two- or three-dimensional confined domains is considered in the limit that the confinement dimensions become comparable to the particle's dimensions. The result is a nonlinear…

Mathematical Physics · Physics 2017-03-23 Maria Bruna , S. Jonathan Chapman

We consider a branching-selection system of particles on the real line that evolves according to the following rules: each particle moves according to a Brownian motion during an exponential lifetime and then splits into two new particles…

Probability · Mathematics 2016-04-07 Michel Pain

We study the existence and uniqueness of the solution of a non-linear coupled system constituted of a degenerate diffusion-growth-fragmentation equation and a differential equation, resulting from the modeling of bacterial growth in a…

Analysis of PDEs · Mathematics 2023-03-22 Josué Tchouanti

We apply the density matrix renormalization group (DMRG) method to a non-equilibrium problem: the asymmetric exclusion process in one dimension. We study the stationary state of the process to calculate the particle density profile…

Statistical Mechanics · Physics 2009-10-30 Yasuhiro Hieida

We derive the macroscopic laws that govern the evolution of the density of particles in the exclusion process on the Sierpinski gasket in the presence of a variable speed boundary. We obtain, at the hydrodynamics level, the heat equation…

Probability · Mathematics 2021-07-09 Joe P. Chen , Patrícia Gonçalves

This work deals with two problems arising in mathematical ecology. The first problem is concerned with diploid branching particle models and its behavior when rapid stirring is added to the interaction. The particle models involve two types…

Probability · Mathematics 2007-05-23 Feng Yu

The one-dimensional (1D) $t-J$ model is investigated using the density matrix renormalization group (DMRG) method. We report for the first time a generalization of the DMRG method to the case of arbitrary band filling and prove a theorem…

Condensed Matter · Physics 2009-10-28 Liang Chen , S. Moukouri

The study of the density evolution naturally arises in Mean Field Game theory for the estimation of the density of the large population dynamics. In this paper, we study the density evolution of McKean-Vlasov stochastic differential…

Probability · Mathematics 2018-12-31 Peter E. Caines , Daniel Ho , Qingshuo Song

We consider a branching-selection particle system on the real line. In this model the total size of the population at time $n$ is limited by $\exp\left(a n^{1/3}\right)$. At each step $n$, every individual dies while reproducing…

Probability · Mathematics 2018-10-02 Bastien Mallein

Aim of this note is to analyse branching Brownian motion within the class of models introduced in the recent paper [4] and called chemical diffusion master equations. These models provide a description for the probabilistic evolution of…

Probability · Mathematics 2024-01-23 Alberto Lanconelli , Berk Tan Perçin

In this paper, we study the asymptotic behaviour of plane partitions distributed according to a $q^{\text{Volume}}$-weighted Muttalib--Borodin ensemble and its associated discrete point process. We establish a Large Deviation Principle for…

Probability · Mathematics 2026-04-09 Jonathan Husson , Guido Mazzuca , Alessandra Occelli

In this thesis, branching Brownian motion (BBM) is a random particle system where the particles diffuse on the real line according to Brownian motions and branch at constant rate into a random number of particles with expectation greater…

Probability · Mathematics 2013-04-02 Pascal Maillard

Darwinian evolution can be modeled in general terms as a flow in the space of fitness (i.e. reproductive rate) distributions. In the diffusion approximation, Tsimring et al. have showed that this flow admits "fitness wave" solutions:…

Populations and Evolution · Quantitative Biology 2017-01-30 Matteo Smerlak , Ahmed Youssef

The mechanical process of progressively debonding an adhesive membrane from a substrate is described as a quasistatic variational evolution of sets and herein investigated. Existence of energetic solutions, based on global minimisers of a…

Analysis of PDEs · Mathematics 2025-03-24 Eleonora Maggiorelli , Filippo Riva , Edoardo Giovanni Tolotti

In this article, we study a weighted particle representation for a class of stochastic partial differential equations with Dirichlet boundary conditions. The locations and weights of the particles satisfy an infinite system of stochastic…

Probability · Mathematics 2018-12-24 Dan Crisan , Christopher Janjigian , Thomas G. Kurtz

We study a class of evolution models, where the breeding process involves an arbitrary exchangeable process, allowing for mutations to appear. The population size $n$ is fixed, hence after breeding, selection is applied. Individuals are…

Probability · Mathematics 2022-05-03 Daniela Bertacchi , Juri Lember , Fabio Zucca

We study the evolution of states of an infinite system of point particles dwelling in a locally compact Polish space $X$. Each particle produces at random a finite `cloud' of offsprings distributed over $X$ according to some law, and…

Probability · Mathematics 2021-07-19 Yuri Kozitsky , Agnieszka Tanaś