Related papers: Asymptotically Optimal Codes Correcting One Substr…
Adaptive coding faces the following problem: given a collection of source classes such that each class in the collection has non-trivial minimax redundancy rate, can we design a single code which is asymptotically minimax over each class in…
In steganography, we always hope to maximize the embedding payload subject to an upper-bounded distortion. We need suitable distortion measurement to evaluate the embedding impact. However, different distortion functions exposes different…
In the usual trace reconstruction problem, the goal is to exactly reconstruct an unknown string of length $n$ after it passes through a deletion channel many times independently, producing a set of traces (i.e., random subsequences of the…
In the $k$-Edit Circular Pattern Matching ($k$-Edit CPM) problem, we are given a length-$n$ text $T$, a length-$m$ pattern $P$, and a positive integer threshold $k$, and we are to report all starting positions of the substrings of $T$ that…
String Edit Distance is a more-than-classical problem whose behavior in the dynamic setting, where the strings are updated over time, is well studied. A single-character substitution, insertion, or deletion can be processed in time…
Tandem duplication is the process of inserting a copy of a segment of DNA adjacent to the original position. Motivated by applications that store data in living organisms, Jain et al. (2017) proposed the study of codes that correct tandem…
We report (to our knowledge) the first evaluation of Constraint Satisfaction as a computational framework for solving closest string problems. We show that careful consideration of symbol occurrences can provide search heuristics that…
We study the space requirements of a sorting algorithm where only items that at the end will be adjacent are kept together. This is equivalent to the following combinatorial problem: Consider a string of fixed length n that starts as a…
We consider the problem of coding for the substring channel, in which information strings are observed only through their (multisets of) substrings. Due to existing DNA sequencing techniques and applications in DNA-based storage systems,…
This paper introduces a new family of reconstruction codes which is motivated by applications in DNA data storage and sequencing. In such applications, DNA strands are sequenced by reading some subset of their substrings. While previous…
We improve the upper bound of Levenshtein for the cardinality of a code of length 4 capable of correcting single deletions over an alphabet of even size. We also illustrate that the new upper bound is sharp. Furthermore we will construct an…
We find a two term asymptotic expansion for the optimal expected value of a sequentially selected monotone subsequence from a random permutation of length n. A striking feature of this expansion is that tells us that the expected value of…
Quantum error correction allows for faulty quantum systems to behave in an effectively error free manner. One important class of techniques for quantum error correction is the class of quantum subsystem codes, which are relevant both to…
Tree edit distance is a well-studied measure of dissimilarity between rooted trees with node labels. It can be computed in $O(n^3)$ time [Demaine, Mozes, Rossman, and Weimann, ICALP 2007], and fine-grained hardness results suggest that the…
This paper gives some theory and efficient design of binary block systematic codes capable of controlling the deletions of the symbol ``$0$'' (referred to as $0$-deletions) and/or the insertions of the symbol ``$0$'' (referred to as…
The Damerau-Levenshtein distance between two sequences is the minimum number of operations (deletions, insertions, substitutions, and adjacent transpositions) required to convert one sequence into another. Notwithstanding a long history of…
This paper studies the problem of constructing codes correcting deletions in arrays. Under this model, it is assumed that an $n\times n$ array can experience deletions of rows and columns. These deletion errors are referred to as…
Cyclic redundancy check (CRC) codes check if a codeword is correctly received. This paper presents an algorithm to design CRC codes that are optimized for the code-specific error behavior of a specified feedforward convolutional code. The…
An effective 'on-the-fly' mechanism for stochastic lossy coding of Markov sources using string matching techniques is proposed in this paper. Earlier work has shown that the rate-distortion bound can be asymptotically achieved by a 'natural…
We propose two systematic constructions of deletion-correcting codes for protecting quantum information. The first one works with qudits of any dimension, but only one deletion is corrected and the constructed codes are asymptotically bad.…