Related papers: Combinatorics of Palindromes
Improving a result of K\'arolyi, Pach and T\'oth, we construct an arrangement of $n$ segments in the plane with at most $n^{\log{8} / \log{169}}$ pairwise crossing or pairwise disjoint segments. We use the recursive method based on…
We explore a general method based on trees of elementary submodels in order to present highly simplified proofs to numerous results in infinite combinatorics. While countable elementary submodels have been employed in such settings already,…
We consider the problem of reconstructing graphs or labeled graphs from neighborhoods of a given radius r. Special instances of this problem include the well known: DNA shotgun assembly; the lesser-known: neural network reconstruction; and…
This paper studies reconstruction of strings based upon their substrings spectrum. Under this paradigm, it is assumed that all substrings of some fixed length are received and the goal is to reconstruct the string. While many existing works…
We prove a number of results on the structure and enumeration of palindromes and antipalindromes. In particular, we study conjugates of palindromes, palindromic pairs, rich words, and the counterparts of these notions for antipalindromes.
This paper is concerned with the question of reconstructing a vector in a finite-dimensional complex Hilbert space when only the magnitudes of the coefficients of the vector under a redundant linear map are known. We present new…
We deepen the link between two classic areas of combinatorial optimization: augmentation and packing arborescences. We consider the following type of questions: What is the minimum number of arcs to be added to a digraph so that in the…
Traditionally, reconfiguration problems ask the question whether a given solution of an optimization problem can be transformed to a target solution in a sequence of small steps that preserve feasibility of the intermediate solutions. In…
We thoroughly study a novel but basic combinatorial matrix completion problem: Given a binary incomplete matrix, fill in the missing entries so that every pair of rows in the resulting matrix has a Hamming distance within a specified range.…
Genome sequencing is the basis for many modern biological and medicinal studies. With recent technological advances, metagenomics has become a problem of interest. This problem entails the analysis and reconstruction of multiple DNA…
We introduce a new combinatorial structure: the superselector. We show that superselectors subsume several important combinatorial structures used in the past few years to solve problems in group testing, compressed sensing, multi-channel…
We consider the problem of enumeration of planar maps and revisit its one-matrix model solution in the light of recent combinatorial techniques involving conjugated trees. We adapt and generalize these techniques so as to give an…
In this paper we present a collection of results pertaining to haplotyping. The first set of results concerns the combinatorial problem of reconstructing haplotypes from incomplete and/or imperfectly sequenced haplotype data. More…
Topologically constrained genome-like polymers often double-fold into tree-like configurations, which can be modelled on the level of folded (ring) polymers or on the level of the underlying random trees. For both descriptions, we have…
We study the two inference problems of detecting and recovering an isolated community of \emph{general} structure planted in a random graph. The detection problem is formalized as a hypothesis testing problem, where under the null…
We describe computer searches that prove the graph reconstruction conjecture for graphs with up to 13 vertices and some limited classes on larger sizes. We also investigate the reconstructibility of tournaments up to 13 vertices, digraphs…
Reconciling gene trees with a species tree is a fundamental problem to understand the evolution of gene families. Many existing approaches reconcile each gene tree independently. However, it is well-known that the evolution of gene families…
The Weisfeiler-Leman (WL) algorithms form a family of incomplete approaches to the graph isomorphism problem. They recently found various applications in algorithmic group theory and machine learning. In fact, the algorithms form a…
In the Graph Reconstruction (GR) problem, the goal is to recover a hidden graph by utilizing some oracle that provides limited access to the structure of the graph. The interest is in characterizing how strong different oracles are when the…
A $k$-deck of a (coloured) graph is a multiset of its induced $k$-vertex subgraphs. Given a graph $G$, when is it possible to reconstruct with high probability a uniformly random colouring of its vertices in $r$ colours from its $k$-deck?…