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Correct performance assessment is crucial for evaluating modern artificial intelligence algorithms in medicine like deep-learning based medical image segmentation models. However, there is no universal metric library in Python for…

Computer Vision and Pattern Recognition · Computer Science 2022-01-25 Dominik Müller , Dennis Hartmann , Philip Meyer , Florian Auer , Iñaki Soto-Rey , Frank Kramer

Transmission spectroscopy is among the most fruitful techniques to infer the main opacity sources present in the upper atmosphere of a transiting planet and to constrain the composition of the thermosphere and of the unbound exosphere. Not…

Earth and Planetary Astrophysics · Physics 2022-11-09 Daniela Sicilia , Luca Malavolta , Lorenzo Pino , Gaetano Scandariato , Valerio Nascimbeni , Giampaolo Piotto , Isabella Pagano

Accurate visualization of double star astrometric data is essential for effective analysis and interpretation. This article presents a Python toolkit designed for astronomers who need to plot measurements from diverse sources -- historical,…

Instrumentation and Methods for Astrophysics · Physics 2025-02-21 Xinyue Wang

We describe a new approach to obtaining very high surface densities of optical spectra in astronomical observations with extremely accurate subtraction of night sky emission. The observing technique requires that the telescope is nodded…

Astrophysics · Physics 2011-03-10 Karl Glazebrook , Joss Bland-Hawthorn

Optical stellar interferometers have demonstrated milli-arcsecond resolution with few apertures spaced hundreds of meters apart. To obtain rich direct images, many apertures will be needed, for a better sampling of the incoming wavefront.…

Instrumentation and Methods for Astrophysics · Physics 2014-09-17 Arun Surya , Swapan K. Saha , Antoine Labeyrie

Bright-field microscopy, a cost-effective solution for live-cell culture, is often the only resource available, along with standard CPUs, for many low-budget labs. The inherent challenges of bright-field images -- their noisiness, low…

Quantitative Methods · Quantitative Biology 2025-11-03 Surajit Das , Pavel Zun

Modelling complex line emission in the interstellar medium (ISM) is a degenerate, high-dimensional problem. Here, we present McFine, a tool for automated multi-component fitting of emission lines with complex hyperfine structure, in a fully…

Astrophysics of Galaxies · Physics 2024-09-11 Thomas G. Williams , Elizabeth J. Watkins

We present a new approach to the sky subtraction for long-slit spectra suitable for low-surface brightness objects based on the controlled reconstruction of the night sky spectrum in the Fourier space using twilight or arc-line frames as…

Instrumentation and Methods for Astrophysics · Physics 2010-12-21 Ivan Yu. Katkov , Igor V. Chilingarian

We present iSLAT (the Interactive Spectral-Line Analysis Tool), a python-based graphical tool that allows users to interactively explore and manually fit line emission observed in molecular spectra. iSLAT adopts a simple slab model that…

Instrumentation and Methods for Astrophysics · Physics 2024-02-07 Evan Jellison , Matthew Johnson , Andrea Banzatti , Simon Bruderer

We present an overview of Sherpa, an open source Python project, and discuss its development history, broad design concepts and capabilities. Sherpa contains powerful tools for combining parametric models into complex expressions that can…

High-throughput $ab$ $initio$ calculations are the indispensable parts of data-driven discovery of new materials with desirable properties, as reflected in the establishment of several online material databases. The accumulation of…

Computational Physics · Physics 2024-07-30 Niraj K. Nepal , Paul C. Canfield , Lin-Lin Wang

Background and Objective: Deep learning enables tremendous progress in medical image analysis. One driving force of this progress are open-source frameworks like TensorFlow and PyTorch. However, these frameworks rarely address issues…

Image and Video Processing · Electrical Eng. & Systems 2021-04-29 Alain Jungo , Olivier Scheidegger , Mauricio Reyes , Fabian Balsiger

Characterizing the temporal variability of astrophysical sources is key to understanding the underlying physical processes driving their emissions. This work introduces a gammapy_SyLC, a Python package that offers tools to simulate and fit…

High Energy Astrophysical Phenomena · Physics 2025-03-19 Claudio Galelli

Oblique plane microscopy, OPM, is a form of lightsheet microscopy that permits volumetric imaging of biological samples at high temporal and spatial resolution. However, the imaging geometry of OPM, and related variants of light sheet…

Image and Video Processing · Electrical Eng. & Systems 2022-11-03 Jacob R. Lamb , Edward N. Ward , Clemens F. Kaminski

In this article we report the release of a new program for batch processing and visualization of powder diffraction data. The program, which is free-of-charge for non-commercial use and can be obtained with its detailed documentation from…

Computational Physics · Physics 2009-12-05 Taha Sochi

Access to astronomical data through archives and VO is essential but does not solve all problems. Availability of appropriate software for analyzing the data is often equally important for the efficiency with which a researcher can publish…

Instrumentation and Methods for Astrophysics · Physics 2010-04-27 P. Grosbol , D. Tody

The latest generation of high-resolution spectrograph instruments on 10m-class telescopes continue to pursue challenging science cases. Consequently, ever more precise calibration methods are necessary to enable trail-blazing science…

The Spectrograph of the RISTRETTO instrument is now currently being manufactured. RISTETTO is an instrument designed to detect and characterize the reflected light of nearby exoplanets. It combines high contrast imaging and high resolution…

The open-source PyNX toolkit [Favre-Nicolin et al (2011) arXiv:1010.2641, Mandula et al (2016)] has been extended to provide tools for coherent X-ray imaging data analysis and simulation. All calculations can be executed on graphical…

Hyperspectral cameras provide numerous advantages in terms of the utility of the data captured. They capture hundreds of data points per sample (pixel) instead of only the few of RGB or multispectral camera systems. Aerial systems sense…

Image and Video Processing · Electrical Eng. & Systems 2026-01-09 Thomas P. Watson , Eddie L. Jacobs