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Sparse autoencoders (SAEs) enable interpretability research by decomposing entangled model activations into monosemantic features. However, under what circumstances SAEs derive most fine-grained latent features for safety, a low-frequency…

Machine Learning · Computer Science 2026-04-15 Jiaqi Weng , Han Zheng , Hanyu Zhang , Ej Zhou , Qinqin He , Jialing Tao , Hui Xue , Zhixuan Chu , Xiting Wang

Protein language models have revolutionized structure prediction, but their nonlinear nature obscures how sequence representations inform structure prediction. While sparse autoencoders (SAEs) offer a path to interpretability here by…

Biomolecules · Quantitative Biology 2025-03-13 Nithin Parsan , David J. Yang , John J. Yang

Deep learning, particularly with the advancement of Large Language Models, has transformed biomolecular modeling, with protein language models such as ESM inspiring emerging RNA language models such as RiNALMo. Recent work has begun…

Biomolecules · Quantitative Biology 2026-05-18 Taehan Kim , Sangdae Nam

Sparse autoencoders (SAEs) are a promising approach for uncovering interpretable features in large language models (LLMs). While several automated evaluation methods exist for SAEs, most rely on external LLMs. In this work, we introduce…

Computation and Language · Computer Science 2025-09-30 Alex Gulko , Yusen Peng , Sachin Kumar

Transformer-based models have become state-of-the-art tools in various machine learning tasks, including time series classification, yet their complexity makes understanding their internal decision-making challenging. Existing…

Machine Learning · Computer Science 2025-11-27 Matīss Kalnāre , Sofoklis Kitharidis , Thomas Bäck , Niki van Stein

Sparse Autoencoders (SAEs) have shown to find interpretable features in neural networks from polysemantic neurons caused by superposition. Previous work has shown SAEs are an effective tool to extract interpretable features from the early…

Computer Vision and Pattern Recognition · Computer Science 2025-04-17 Matthew Bozoukov

Although sparse autoencoders (SAEs) are crucial for identifying interpretable features in neural networks, it is still challenging to distinguish between real computational patterns and erroneous correlations. We introduce Model-X knockoffs…

Machine Learning · Computer Science 2025-11-18 Tsogt-Ochir Enkhbayar

Sparse Autoencoders (SAEs) have shown promise in improving the interpretability of neural network activations, but can learn features that are not features of the input, limiting their effectiveness. We propose \textsc{Mutual Feature…

Machine Learning · Computer Science 2024-11-07 Luke Marks , Alasdair Paren , David Krueger , Fazl Barez

The linear representation hypothesis states that neural network activations encode high-level concepts as linear mixtures. However, under superposition, this encoding is a projection from a higher-dimensional concept space into a…

Machine Learning · Computer Science 2026-03-31 Vitória Barin Pacela , Shruti Joshi , Isabela Camacho , Simon Lacoste-Julien , David Klindt

Sparse Autoencoders (SAEs) can efficiently identify candidate monosemantic features from pretrained neural networks for galaxy morphology. We demonstrate this on Euclid Q1 images using both supervised (Zoobot) and new self-supervised (MAE)…

Instrumentation and Methods for Astrophysics · Physics 2025-11-13 John F. Wu , Michael Walmsley

Recent interpretability work on large language models (LLMs) has been increasingly dominated by a feature-discovery approach with the help of proxy modules. Then, the quality of features learned by, e.g., sparse auto-encoders (SAEs), is…

Machine Learning · Computer Science 2025-10-28 Mengyu Ye , Jun Suzuki , Tatsuro Inaba , Tatsuki Kuribayashi

Sparse autoencoders (SAEs) are a promising approach to extracting features from neural networks, enabling model interpretability as well as causal interventions on model internals. SAEs generate sparse feature representations using a…

Machine Learning · Computer Science 2024-11-11 Kola Ayonrinde

Sparse autoencoders (SAEs) are widely used for interpreting language model activations. A key evaluation metric is the increase in cross-entropy loss between the original model logits and the reconstructed model logits when replacing model…

Machine Learning · Computer Science 2025-04-01 Adam Karvonen

Sparse autoencoders (SAEs) have gained a lot of attention as a promising tool to improve the interpretability of large language models (LLMs) by mapping the complex superposition of polysemantic neurons into monosemantic features and…

Computation and Language · Computer Science 2025-02-19 Gouki Minegishi , Hiroki Furuta , Yusuke Iwasawa , Yutaka Matsuo

Sparse autoencoders (SAEs) are increasingly used to extract activation directions for inference-time steering, but their standard sparsity objective treats latent features as independent. This prior can be poorly matched to high-level…

Machine Learning · Computer Science 2026-05-18 Jehyeok Yeon , Federico Cinus , Yifan Wu , Luca Luceri

Sparse autoencoders (SAEs) have become an important tool for analyzing and interpreting the activation space of transformer-based language models (LMs). However, SAEs suffer several shortcomings that diminish their utility and internal…

Computation and Language · Computer Science 2025-06-27 Ryosuke Takahashi , Tatsuro Inaba , Kentaro Inui , Benjamin Heinzerling

Understanding the internal organization of neural networks remains a fundamental challenge in deep learning interpretability. We address this challenge by exploring a novel Sparse Mixture of Experts Variational Autoencoder (SMoE-VAE)…

Machine Learning · Computer Science 2025-09-15 Strahinja Nikolic , Ilker Oguz , Demetri Psaltis

Autoencoder recommenders have recently shown state-of-the-art performance in the recommendation task due to their ability to model non-linear item relationships effectively. However, existing autoencoder recommenders use fully-connected…

Information Retrieval · Computer Science 2020-08-19 Farhan Khawar , Leonard Kin Man Poon , Nevin Lianwen Zhang

A key challenge in interpretability is to decompose model activations into meaningful features. Sparse autoencoders (SAEs) have emerged as a promising tool for this task. However, a central problem in evaluating the quality of SAEs is the…

Machine Learning · Computer Science 2024-10-11 Constantin Venhoff , Anisoara Calinescu , Philip Torr , Christian Schroeder de Witt

Previous research on word embeddings has shown that sparse representations, which can be either learned on top of existing dense embeddings or obtained through model constraints during training time, have the benefit of increased…

Computation and Language · Computer Science 2018-09-26 Valentin Trifonov , Octavian-Eugen Ganea , Anna Potapenko , Thomas Hofmann