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In structure-based virtual screening, it is often necessary to evaluate the binding free energy of protein-ligand complexes by considering not only molecular conformations but also how these structures shift and rotate in space. The number…

Quantum Physics · Physics 2025-07-25 Pei-Kun Yang

Structure-based virtual screening (SBVS) is a key workflow in computational drug discovery. SBVS models are assessed by measuring the enrichment of known active molecules over decoys in retrospective screens. However, the standard formula…

Quantitative Methods · Quantitative Biology 2024-03-18 Michael Brocidiacono , Konstantin I. Popov , Alexander Tropsha

Structure-based virtual screening must address a combinatorial explosion arising from up to 10^60 drug-like molecules, multiple conformations of proteins and ligands, and all possible spatial translations and rotations of ligands within the…

Quantum Physics · Physics 2025-05-14 Pei-Kun Yang

Machine Learning (ML) for Ligand Based Virtual Screening (LB-VS) is an important in-silico tool for discovering new drugs in a faster and cost-effective manner, especially for emerging diseases such as COVID-19. In this paper, we propose a…

Accurate classification of brain tumors from MRI scans is critical for effective treatment planning. This study presents a Hybrid Quantum Convolutional Neural Network (HQCNN) that integrates quantum feature-encoding circuits with depth-wise…

Image and Video Processing · Electrical Eng. & Systems 2025-05-27 Muhammad Al-Zafar Khan , Abdullah Al Omar Galib , Nouhaila Innan , Mohamed Bennai

Equivariant quantum neural networks (QNNs) are promising variational models that exploit symmetries to improve machine learning capabilities. Despite theoretical developments in equivariant QNNs, their implementation on near-term quantum…

Quantum Physics · Physics 2026-04-20 Koki Chinzei , Quoc Hoan Tran , Yasuhiro Endo , Hirotaka Oshima

Early identification of abnormal physiological patterns is essential for the timely detection of cardiac disease. This work introduces a hybrid quantum-classical convolutional neural network (QCNN) designed to classify S3 and murmur…

Machine Learning · Computer Science 2025-11-05 Yasaman Torabi , Shahram Shirani , James P. Reilly

Virtual screening (VS) is an essential task in drug discovery, focusing on the identification of small-molecule ligands that bind to specific protein pockets. Existing deep learning methods, from early regression models to recent…

Machine Learning · Computer Science 2025-11-11 Bowei He , Bowen Gao , Yankai Chen , Yanyan Lan , Chen Ma , Philip S. Yu , Ya-Qin Zhang , Wei-Ying Ma

Quantum convolutional neural networks (QCNNs) represent a promising approach in quantum machine learning, paving new directions for both quantum and classical data analysis. This approach is particularly attractive due to the absence of the…

Quantum Physics · Physics 2025-08-06 Changwon Lee , Israel F. Araujo , Dongha Kim , Junghan Lee , Siheon Park , Ju-Young Ryu , Daniel K. Park

The quantum convolutional neural network (QCNN) is a promising quantum machine learning (QML) model that is expected to achieve quantum advantages in classically intractable problems. However, the QCNN requires a large number of…

Quantum Physics · Physics 2024-05-07 Koki Chinzei , Quoc Hoan Tran , Kazunori Maruyama , Hirotaka Oshima , Shintaro Sato

The rapid growth of computer vision and increasingly complex image recognition tasks has exposed fundamental computational limitations of classical machine learning models, motivating the exploration of quantum computing as an emerging new…

Computer Vision and Pattern Recognition · Computer Science 2026-05-28 Sudip Vhaduri , Ryan Gammon , Sayanton Dibbo

Quantum machine learning has emerged as a promising approach to improve feature extraction and classification tasks in high-dimensional data domains such as medical imaging. In this work, we present a hybrid Quantum-Classical Convolutional…

Quantum Physics · Physics 2026-05-12 Ece Yurtseven

This study evaluates the use of Quantum Convolutional Neural Networks (QCNNs) for identifying signals resembling Gamma-Ray Bursts (GRBs) within simulated astrophysical datasets in the form of light curves. The task addressed here focuses on…

Speech-based machine learning systems are sensitive to noise, complicating reliable deployment in emotion recognition and voice pathology detection. We evaluate the robustness of a hybrid quantum machine learning model, quanvolutional…

Sound · Computer Science 2026-01-07 Ha Tran , Bipasha Kashyap , Pubudu N. Pathirana

A brain-computer interface (BCI) system enables direct communication between the brain and external devices, offering significant potential for assistive technologies and advanced human-computer interaction. Despite progress, BCI systems…

Quantum Physics · Physics 2025-05-21 Bikash K. Behera , Saif Al-Kuwari , Ahmed Farouk

Virtual screening (VS) is an essential technique for understanding biomolecular interactions, particularly, drug design and discovery. The best-performing VS models depend vitally on three-dimensional (3D) structures, which are not…

Biomolecules · Quantitative Biology 2022-12-29 Li Shen , Hongsong Feng , Yuchi Qiu , Guo-Wei Wei

Structure-based virtual screening (SBVS) is a promising in silico technique that integrates computational methods into drug design. An extensively used method in SBVS is molecular docking. However, the docking process can hardly be…

Biomolecules · Quantitative Biology 2021-02-12 Junfeng Wu , Dawei Leng , Lurong Pan

Convolutional Neural Network (CNN) is a popular model in computer vision and has the advantage of making good use of the correlation information of data. However, CNN is challenging to learn efficiently if the given dimension of data or…

Quantum Physics · Physics 2020-09-22 Seunghyeok Oh , Jaeho Choi , Joongheon Kim

In this study, we propose a quantum convolutional neural network (QCNN)-based framework with the neural quantum embedding (NQE) to predict HIV-1 protease cleavage sites in amino acid sequences from viral and human proteins. To assess the…

Quantum Physics · Physics 2025-10-03 Junggu Choi , Junho Lee , Kyle L. Jung , Jae U. Jung

This study investigates the application of quantum neural networks (QNNs) for propensity score estimation to address selection bias in comparing survival outcomes between laparoscopic and open surgical techniques in a cohort of 1177…

Quantum Physics · Physics 2025-06-26 Vojtěch Novák , Ivan Zelinka , Lenka Přibylová , Lubomír Martínek
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