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De-identification is the task of identifying protected health information (PHI) in the clinical text. Existing neural de-identification models often fail to generalize to a new dataset. We propose a simple yet effective data augmentation…

Computation and Language · Computer Science 2020-10-13 Xiang Yue , Shuang Zhou

Since radiology reports needed for clinical practice and research are written and stored in free-text narrations, extraction of relative information for further analysis is difficult. In these circumstances, natural language processing…

Computation and Language · Computer Science 2022-09-27 Seyed Ali Reza Moezzi , Abdolrahman Ghaedi , Mojdeh Rahmanian , Seyedeh Zahra Mousavi , Ashkan Sami

Large language models pretrained on general-domain corpora often exhibit tokenization inefficiencies when applied to specialized domains. Although continual pretraining for domain adaptation partially alleviate performance degradation, it…

Computation and Language · Computer Science 2026-05-19 Gunjan Balde , Soumyadeep Roy , Mainack Mondal , Niloy Ganguly

We conduct investigations on clinical text machine translation by examining multilingual neural network models using deep learning such as Transformer based structures. Furthermore, to address the language resource imbalance issue, we also…

Computation and Language · Computer Science 2024-02-22 Lifeng Han , Serge Gladkoff , Gleb Erofeev , Irina Sorokina , Betty Galiano , Goran Nenadic

This research paper investigates the application of Large Language Models (LLMs) in healthcare, specifically focusing on enhancing medical decision support through Retrieval-Augmented Generation (RAG) integrated with hospital-specific data…

Computation and Language · Computer Science 2025-05-07 Mohammad Shoaib Ansari , Mohd Sohail Ali Khan , Shubham Revankar , Aditya Varma , Anil S. Mokhade

The accuracy of predictive models for solitary pulmonary nodule (SPN) diagnosis can be greatly increased by incorporating repeat imaging and medical context, such as electronic health records (EHRs). However, clinically routine modalities…

Recent advancements in deep neural networks have markedly enhanced the performance of computer vision tasks, yet the specialized nature of these networks often necessitates extensive data and high computational power. Addressing these…

Computer Vision and Pattern Recognition · Computer Science 2024-01-03 Jiayou Chao , Wei Zhu

Automated text simplification aims to produce simple versions of complex texts. This task is especially useful in the medical domain, where the latest medical findings are typically communicated via complex and technical articles. This…

Computation and Language · Computer Science 2023-10-19 Sebastian Joseph , Kathryn Kazanas , Keziah Reina , Vishnesh J. Ramanathan , Wei Xu , Byron C. Wallace , Junyi Jessy Li

The classification of clinical notes into specific diagnostic categories is critical in healthcare, especially for mental health conditions like Anxiety and Adjustment Disorder. In this study, we compare the performance of various…

Developing robust and versatile deep-learning models is essential for enhancing diagnostic accuracy and guiding clinical interventions in medical imaging, but it requires a large amount of annotated data. The advancement of deep learning…

Computer Vision and Pattern Recognition · Computer Science 2025-03-14 Nahid Ul Islam , DongAo Ma , Jiaxuan Pang , Shivasakthi Senthil Velan , Michael Gotway , Jianming Liang

Training deep neural networks from scratch on natural language processing (NLP) tasks requires significant amount of manually labeled text corpus and substantial time to converge, which usually cannot be satisfied by the customers. In this…

Computation and Language · Computer Science 2019-10-29 Yunzhe Tao , Saurabh Gupta , Satyapriya Krishna , Xiong Zhou , Orchid Majumder , Vineet Khare

Many models are pretrained on redacted text for privacy reasons. Clinical foundation models are often trained on de-identified text, which uses special syntax (masked) text in place of protected health information. Even though these models…

Computation and Language · Computer Science 2025-06-18 Paul Landes , Aaron J Chaise , Tarak Nath Nandi , Ravi K Madduri

Domain adaptive pretraining, i.e. the continued unsupervised pretraining of a language model on domain-specific text, improves the modelling of text for downstream tasks within the domain. Numerous real-world applications are based on…

Computation and Language · Computer Science 2021-09-15 Rasmus Kær Jørgensen , Mareike Hartmann , Xiang Dai , Desmond Elliott

Large Language Models (LLMs) have demonstrated remarkable performance across various domains, including healthcare. However, their ability to effectively represent structured non-textual data, such as the alphanumeric medical codes used in…

Cancer remains a leading cause of death worldwide, necessitating personalized treatment approaches to improve outcomes. Theranostics, combining molecular-level imaging with targeted therapy, offers potential for precision oncology but…

Computational Engineering, Finance, and Science · Computer Science 2025-05-16 Binesh Sadanandan , Vahid Behzadan

Low-quality data can cause downstream problems in high-stakes applications. Data-centric approach emphasizes on improving dataset quality to enhance model performance. High-quality datasets are needed for general-purpose Large Language…

Computation and Language · Computer Science 2023-10-13 Iva Bojic , Josef Halim , Verena Suharman , Sreeja Tar , Qi Chwen Ong , Duy Phung , Mathieu Ravaut , Shafiq Joty , Josip Car

Multi-label text classification (MLC) is a challenging task in settings of large label sets, where label support follows a Zipfian distribution. In this paper, we address this problem through retrieval augmentation, aiming to improve the…

Computation and Language · Computer Science 2023-05-23 Ilias Chalkidis , Yova Kementchedjhieva

Automated analysis of chest radiography using deep learning has tremendous potential to enhance the clinical diagnosis of diseases in patients. However, deep learning models typically require large amounts of annotated data to achieve high…

Computer Vision and Pattern Recognition · Computer Science 2023-04-10 Keegan Quigley , Miriam Cha , Ruizhi Liao , Geeticka Chauhan , Steven Horng , Seth Berkowitz , Polina Golland

We systematically investigate lightweight strategies to adapt large language models (LLMs) for the task of radiology report summarization (RRS). Specifically, we focus on domain adaptation via pretraining (on natural language, biomedical…

The medical domain is often subject to information overload. The digitization of healthcare, constant updates to online medical repositories, and increasing availability of biomedical datasets make it challenging to effectively analyze the…

Machine Learning · Computer Science 2022-08-03 Ozan Ozyegen , Devika Kabe , Mucahit Cevik