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Biodiversity research requires complete and detailed information to study ecosystem dynamics at different scales. Employing data-driven methods like Machine Learning is getting traction in ecology and more specific biodiversity, offering…

Quantitative Methods · Quantitative Biology 2025-10-27 Stylianos Stasinos , Martino Mensio , Elena Lazovik , Athanasios Trantas

This paper describes a cascading multimodal pipeline for high-resolution biodiversity mapping across Europe, integrating species distribution modeling, biodiversity indicators, and habitat classification. The proposed pipeline first…

Artificial Intelligence · Computer Science 2025-04-08 César Leblanc , Lukas Picek , Benjamin Deneu , Pierre Bonnet , Maximilien Servajean , Rémi Palard , Alexis Joly

Modeling environmental ecosystems is essential for effective resource management, sustainable development, and understanding complex ecological processes. However, traditional methods frequently struggle with the inherent complexity,…

Machine Learning · Computer Science 2025-03-06 Runlong Yu , Shengyu Chen , Yiqun Xie , Xiaowei Jia

Large foundation models (FMs) are transforming Earth science by integrating heterogeneous multimodal data, such as multi-platform imagery, gridded reanalysis data, diverse geophysical and geochemical observations, and domain-specific text,…

Instrumentation and Methods for Astrophysics · Physics 2026-05-14 Xiangyu Zhao , Bo Liu , Yuehan Zhang , Zelin Song , Wanghan Xu , Feng Liu , Fengxiang Wang , Ben Fei , Fenghua Ling , Wangxu Wei , Wenlong Zhang , Xiao-Ming Wu

A challenge in global change biology is to predict how species will respond to future environmental change and to manage these responses. To make such predictions and management actions robust to novel futures, we need to accurately…

Modeling environmental ecosystems is essential for effective resource management, sustainable development, and understanding complex ecological processes. However, traditional data-driven methods face challenges in capturing inherently…

Machine Learning · Computer Science 2025-04-08 Runlong Yu , Shengyu Chen , Yiqun Xie , Huaxiu Yao , Jared Willard , Xiaowei Jia

Foundation models (FMs) are catalyzing a transformative shift in materials science (MatSci) by enabling scalable, general-purpose, and multimodal AI systems for scientific discovery. Unlike traditional machine learning models, which are…

Machine Learning · Computer Science 2025-06-27 Minh-Hao Van , Prateek Verma , Chen Zhao , Xintao Wu

Forests are vital to ecosystems, supporting biodiversity and essential services, but are rapidly changing due to land use and climate change. Understanding and mitigating negative effects requires parsing data on forests at global scale…

Computer Vision and Pattern Recognition · Computer Science 2025-02-25 Nikolaos Ioannis Bountos , Arthur Ouaknine , Ioannis Papoutsis , David Rolnick

Foundation models have transformed natural language processing and computer vision, and their impact is now reshaping remote sensing image analysis. With powerful generalization and transfer learning capabilities, they align naturally with…

Computer Vision and Pattern Recognition · Computer Science 2025-10-28 Liling Yang , Ning Chen , Jun Yue , Yidan Liu , Jiayi Ma , Pedram Ghamisi , Antonio Plaza , Leyuan Fang

Foundation models (FMs) are changing the way medical images are analyzed by learning from large collections of unlabeled data. Instead of relying on manually annotated examples, FMs are pre-trained to learn general-purpose visual features…

Bioinformatics has witnessed a paradigm shift with the increasing integration of artificial intelligence (AI), particularly through the adoption of foundation models (FMs). These AI techniques have rapidly advanced, addressing historical…

Quantitative Methods · Quantitative Biology 2024-02-08 Qing Li , Zhihang Hu , Yixuan Wang , Lei Li , Yimin Fan , Irwin King , Le Song , Yu Li

Foundation Models (FMs) are large-scale, pre-trained artificial intelligence (AI) systems that have revolutionized natural language processing and computer vision, and are now advancing geospatial analysis and Earth Observation (EO). They…

Computer Vision and Pattern Recognition · Computer Science 2025-11-04 Pedram Ghamisi , Weikang Yu , Xiaokang Zhang , Aldino Rizaldy , Jian Wang , Chufeng Zhou , Richard Gloaguen , Gustau Camps-Valls

Foundation models (FMs) emerge as a promising solution to harness distributed and diverse environmental data by leveraging prior knowledge to understand the complicated temporal and spatial correlations within heterogeneous datasets. Unlike…

Machine Learning · Computer Science 2024-09-10 Yi Hu , Jinhang Zuo , Alanis Zhao , Bob Iannucci , Carlee Joe-Wong

Healthcare data now span EHRs, medical imaging, genomics, and wearable sensors, but most diagnostic models still process these modalities in isolation. This limits their ability to capture early, cross-modal disease signatures. This paper…

Machine Learning · Computer Science 2025-12-18 Md Talha Mohsin , Ismail Abdulrashid

Foundation models, first introduced in 2021, refer to large-scale pretrained models (e.g., large language models (LLMs) and vision-language models (VLMs)) that learn from extensive unlabeled datasets through unsupervised methods, enabling…

Structural biology relies on accurate three-dimensional biomolecular structures to advance our understanding of biological functions, disease mechanisms, and therapeutics. While recent advances in deep learning have enabled the development…

Biomolecules · Quantitative Biology 2025-04-02 Yizhen Luo , Jiashuo Wang , Siqi Fan , Zaiqing Nie

Foundation models (FMs) have emerged as a transformative paradigm in medical image analysis, offering the potential to provide generalizable, task-agnostic solutions across a wide range of clinical tasks and imaging modalities. Their…

Computer Vision and Pattern Recognition · Computer Science 2025-11-04 Karma Phuntsho , Abdullah , Kyungmi Lee , Ickjai Lee , Euijoon Ahn

Habitats integrate the abiotic conditions, vegetation composition and structure that support biodiversity and sustain nature's contributions to people. Most habitats face mounting pressures from human activities, which requires accurate,…

Species distribution models (SDMs) aim to predict the distribution of species by relating occurrence data with environmental variables. Recent applications of deep learning to SDMs have enabled new avenues, specifically the inclusion of…

Machine Learning · Computer Science 2024-11-07 Nina van Tiel , Robin Zbinden , Emanuele Dalsasso , Benjamin Kellenberger , Loïc Pellissier , Devis Tuia

We explore adapting foundation models (FMs) from the computer vision domain to geoscience. FMs, large neural networks trained on massive datasets, excel in diverse tasks with remarkable adaptability and generality. However, geoscience faces…

Computer Vision and Pattern Recognition · Computer Science 2024-08-23 Zhixiang Guo , Xinming Wu , Luming Liang , Hanlin Sheng , Nuo Chen , Zhengfa Bi
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