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Convolutional neural networks have been applied to a wide variety of computer vision tasks. Recent advances in semantic segmentation have enabled their application to medical image segmentation. While most CNNs use two-dimensional kernels,…

Computer Vision and Pattern Recognition · Computer Science 2017-07-26 Baris Kayalibay , Grady Jensen , Patrick van der Smagt

Accurate brain tissue segmentation in Magnetic Resonance Imaging (MRI) has attracted the attention of medical doctors and researchers since variations in tissue volume help in diagnosing and monitoring neurological diseases. Several…

Computer Vision and Pattern Recognition · Computer Science 2019-07-30 Jose Bernal , Kaisar Kushibar , Mariano Cabezas , Sergi Valverde , Arnau Oliver , Xavier Lladó

Automatic identification of brain lesions from magnetic resonance imaging (MRI) scans of stroke survivors would be a useful aid in patient diagnosis and treatment planning. We propose a multi-modal multi-path convolutional neural network…

Computer Vision and Pattern Recognition · Computer Science 2019-05-28 Yunzhe Xue , Fadi G. Farhat , Olga Boukrina , A . M. Barrett , Jeffrey R. Binder , Usman W. Roshan , William W. Graves

We propose a novel automatic method for accurate segmentation of the prostate in T2-weighted magnetic resonance imaging (MRI). Our method is based on convolutional neural networks (CNNs). Because of the large variability in the shape, size,…

Image and Video Processing · Electrical Eng. & Systems 2020-01-01 Davood Karimi , Golnoosh Samei , Yanan Shao , Septimiu Salcudean

Recently, deep convolutional neural networks have achieved great success for medical image segmentation. However, unlike segmentation of natural images, most medical images such as MRI and CT are volumetric data. In order to make full use…

Image and Video Processing · Electrical Eng. & Systems 2022-02-08 Yichi Zhang , Qingcheng Liao , Le Ding , Jicong Zhang

Neuroanatomical segmentation in magnetic resonance imaging (MRI) of the brain is a prerequisite for volume, thickness and shape measurements. This work introduces a new highly accurate and versatile method based on 3D convolutional neural…

Quantitative Methods · Quantitative Biology 2019-02-07 Philip Novosad , Vladimir Fonov , D. Louis Collins

With the advent of convolutional neural networks~(CNN), supervised learning methods are increasingly being used for whole brain segmentation. However, a large, manually annotated training dataset of labeled brain images required to train…

Computer Vision and Pattern Recognition · Computer Science 2019-03-05 Amod Jog , Andrew Hoopes , Douglas N. Greve , Koen Van Leemput , Bruce Fischl

The accurate understanding of ischemic stroke lesions is critical for efficient therapy and prognosis of stroke patients. Magnetic resonance imaging (MRI) is sensitive to acute ischemic stroke and is a common diagnostic method for stroke.…

Computer Vision and Pattern Recognition · Computer Science 2025-11-11 R. P. Chowdhury , T. Rahman

Accurately segmenting different organs from medical images is a critical prerequisite for computer-assisted diagnosis and intervention planning. This study proposes a deep learning-based approach for segmenting various organs from CT and…

Manual segmentation of rodent brain lesions from magnetic resonance images (MRIs) is an arduous, time-consuming and subjective task that is highly important in pre-clinical research. Several automatic methods have been developed for…

Image and Video Processing · Electrical Eng. & Systems 2019-08-26 Juan Miguel Valverde , Artem Shatillo , Riccardo de Feo , Olli Gröhn , Alejandra Sierra , Jussi Tohka

Convolutional Neural Networks (CNN) have emerged as powerful tools for learning discriminative image features. In this paper, we propose a framework of 3-D fully CNN models for Glioblastoma segmentation from multi-modality MRI data. By…

Computer Vision and Pattern Recognition · Computer Science 2016-11-15 Darvin Yi , Mu Zhou , Zhao Chen , Olivier Gevaert

Neuroimaging to neuropathology correlation (NTNC) promises to enable the transfer of microscopic signatures of pathology to in vivo imaging with MRI, ultimately enhancing clinical care. NTNC traditionally requires a volumetric MRI scan,…

Computer-aided medical image analysis plays a significant role in assisting medical practitioners for expert clinical diagnosis and deciding the optimal treatment plan. At present, convolutional neural networks (CNN) are the preferred…

Image and Video Processing · Electrical Eng. & Systems 2022-04-29 S Niyas , S J Pawan , M Anand Kumar , Jeny Rajan

When using Convolutional Neural Networks (CNNs) for segmentation of organs and lesions in medical images, the conventional approach is to work with inputs and outputs either as single slice (2D) or whole volumes (3D). One common…

Image and Video Processing · Electrical Eng. & Systems 2020-11-17 Minh H. Vu , Guus Grimbergen , Tufve Nyholm , Tommy Löfstedt

Magnetic resonance imaging (MRI) is a potent diagnostic tool for detecting pathological tissues in various diseases. Different MRI sequences have different contrast mechanisms and sensitivities for different types of lesions, which pose…

Computer Vision and Pattern Recognition · Computer Science 2025-05-13 Lijun Yan , Churan Wang , Fangwei Zhong , Yizhou Wang

Magnetic Resonance Imaging (MRI) is a technology for non-invasive imaging of anatomical features in detail. It can help in functional analysis of organs of a specimen but it is very costly. In this work, methods for (i) virtual…

Image and Video Processing · Electrical Eng. & Systems 2023-03-17 Somoballi Ghoshal , Shremoyee Goswami , Amlan Chakrabarti , Susmita Sur-Kolay

This paper presents a method based on a kernel dictionary learning algorithm for segmenting brain tumor regions in magnetic resonance images (MRI). A set of first-order and second-order statistical feature vectors are extracted from patches…

Computer Vision and Pattern Recognition · Computer Science 2023-10-18 Seyedeh Mahya Mousavi , Mohammad Mostafavi

In this work we propose a novel approach to perform segmentation by leveraging the abstraction capabilities of convolutional neural networks (CNNs). Our method is based on Hough voting, a strategy that allows for fully automatic…

Automatic segmentation of shoulder muscle MRI is challenging due to the high variation in muscle size, shape, texture, and spatial position of tears. Manual segmentation of tear and muscle portion is hard, time-consuming, and subjective to…

Image and Video Processing · Electrical Eng. & Systems 2021-08-27 Saddam Hussain Khan , Asifullah Khan , Yeon Soo Lee , Mehdi Hassan , Woong Kyo jeong

Magnetic Resonance Imaging (MRI) is pivotal in radiology, offering non-invasive and high-quality insights into the human body. Precise segmentation of MRIs into different organs and tissues would be highly beneficial since it would allow…