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Recent advances in language model interpretability using sparse autoencoders (SAEs) have yet to effectively translate to the visual domain, mainly due to the difficulty and ambiguity of labeling visual concepts. In this paper, we introduce…

Computer Vision and Pattern Recognition · Computer Science 2026-05-26 Alexey Kravets , Da Li , Chuan Li , Da Chen , Vinay P. Namboodiri

Deep learning, particularly with the advancement of Large Language Models, has transformed biomolecular modeling, with protein language models such as ESM inspiring emerging RNA language models such as RiNALMo. Recent work has begun…

Biomolecules · Quantitative Biology 2026-05-18 Taehan Kim , Sangdae Nam

Sparse autoencoders (SAEs) offer a natural path toward comparable explanations across different representation spaces. However, current SAEs are trained per modality, producing dictionaries whose features are not directly understandable and…

Computer Vision and Pattern Recognition · Computer Science 2026-02-10 Difei Gu , Yunhe Gao , Gerasimos Chatzoudis , Zihan Dong , Guoning Zhang , Bangwei Guo , Yang Zhou , Mu Zhou , Dimitris Metaxas

Dense embeddings deliver strong retrieval performance but often lack interpretability and controllability. This paper introduces a novel approach using sparse autoencoders (SAE) to interpret and control dense embeddings via the learned…

Information Retrieval · Computer Science 2025-02-25 Hao Kang , Tevin Wang , Chenyan Xiong

In this thesis, we develop methods to enhance the interpretability of recent representation learning techniques in natural language processing (NLP) while accounting for the unavailability of annotated data. We choose to leverage…

Computation and Language · Computer Science 2023-05-05 Ghazi Felhi

Scientific archives now contain hundreds of petabytes of data across genomics, ecology, climate, and molecular biology that could reveal undiscovered patterns if systematically analyzed at scale. Large-scale, weakly-supervised datasets in…

Computer Vision and Pattern Recognition · Computer Science 2025-11-25 Samuel Stevens , Jacob Beattie , Tanya Berger-Wolf , Yu Su

We investigate whether sparse autoencoders (SAEs) can be used to remove knowledge from language models. We use the biology subset of the Weapons of Mass Destruction Proxy dataset and test on the gemma-2b-it and gemma-2-2b-it language…

Machine Learning · Computer Science 2024-11-05 Eoin Farrell , Yeu-Tong Lau , Arthur Conmy

Recent work on sparse autoencoders (SAEs) has shown promise in extracting interpretable features from neural networks and addressing challenges with polysemantic neurons caused by superposition. In this paper, we apply SAEs to the early…

Machine Learning · Computer Science 2024-09-10 Liv Gorton

Recommendation model interpretation aims to reveal the relationships between inputs, model internal representations and outputs to enhance the transparency, interpretability, and trustworthiness of recommendation systems. However, the…

Information Retrieval · Computer Science 2026-01-27 Jiayin Wang , Xiaoyu Zhang , Weizhi Ma , Zhiqiang Guo , Min Zhang

A key barrier to interpreting large language models is polysemanticity, where neurons activate for multiple unrelated concepts. Sparse autoencoders (SAEs) have been proposed to mitigate this issue by transforming dense activations into…

Machine Learning · Computer Science 2025-10-20 Moghis Fereidouni , Muhammad Umair Haider , Peizhong Ju , A. B. Siddique

Large language models have achieved remarkable capabilities across diverse tasks, yet their internal decision-making processes remain largely opaque, limiting our ability to inspect, control, and systematically improve them. This opacity…

We propose a novel method that leverages sparse autoencoders (SAEs) and clustering techniques to analyze the internal token representations of large language models (LLMs) and guide generations in mathematical reasoning tasks. Our approach…

Artificial Intelligence · Computer Science 2025-10-03 Daniel Zhao , Abhilash Shankarampeta , Lanxiang Hu , Tajana Rosing , Hao Zhang

The fidelity with which neural networks can now generate content such as music presents a scientific opportunity: these systems appear to have learned implicit theories of such content's structure through statistical learning alone. This…

Sound · Computer Science 2026-03-03 Nikhil Singh , Manuel Cherep , Pattie Maes

Sparse autoencoders (SAEs) are now standard tools for decomposing language model activations into interpretable features, and automated interpretability pipelines routinely assign each feature a short natural-language explanation. Existing…

Machine Learning · Computer Science 2026-05-14 Jordan F. McCann

Despite Large Language Models' remarkable capabilities, understanding their internal representations remains challenging. Mechanistic interpretability tools such as sparse autoencoders (SAEs) were developed to extract interpretable features…

Machine Learning · Computer Science 2026-01-06 Xiangchen Song , Jiaqi Sun , Zijian Li , Yujia Zheng , Kun Zhang

Sparse Autoencoders (SAEs) that can accurately reconstruct their input (minimizing distortion) by making efficient use of few features (minimizing the rate) often fail to learn monosemantic representations (highly interpretable), limiting…

Machine Learning · Computer Science 2026-05-15 Tommaso Mencattini , Francesco Montagna , Francesco Locatello

Sparse Autoencoders (SAEs) can efficiently identify candidate monosemantic features from pretrained neural networks for galaxy morphology. We demonstrate this on Euclid Q1 images using both supervised (Zoobot) and new self-supervised (MAE)…

Instrumentation and Methods for Astrophysics · Physics 2025-11-13 John F. Wu , Michael Walmsley

Sparse autoencoders (SAEs) are used to decompose neural network activations into human-interpretable features. Typically, features learned by a single SAE are used for downstream applications. However, it has recently been shown that SAEs…

Machine Learning · Computer Science 2025-05-23 Soham Gadgil , Chris Lin , Su-In Lee

As Large Language Models become integral to software development, with substantial portions of AI-suggested code entering production, understanding their internal correctness mechanisms becomes critical for safe deployment. We apply sparse…

Software Engineering · Computer Science 2025-10-06 Kriz Tahimic , Charibeth Cheng

Sparse autoencoders (SAEs) are an unsupervised method for learning a sparse decomposition of a neural network's latent representations into seemingly interpretable features. Despite recent excitement about their potential, research…