Related papers: MedicalBERT: enhancing biomedical natural language…
Pre-trained language models have recently contributed to significant advances in NLP tasks. Recently, multi-modal versions of BERT have been developed, using heavy pre-training relying on vast corpora of aligned textual and image data,…
Transformer-based pretrained models like BERT, GPT-2 and T5 have been finetuned for a large number of natural language processing (NLP) tasks, and have been shown to be very effective. However, while finetuning, what changes across layers…
Unsupervised pretraining models have been shown to facilitate a wide range of downstream NLP applications. These models, however, retain some of the limitations of traditional static word embeddings. In particular, they encode only the…
Transformer-based language models such as BERT have become foundational in NLP, yet their performance degrades in specialized domains like patents, which contain long, technical, and legally structured text. Prior approaches to patent NLP…
We introduce AnnualBERT, a series of language models designed specifically to capture the temporal evolution of scientific text. Deviating from the prevailing paradigms of subword tokenizations and "one model to rule them all", AnnualBERT…
GPT-2 and BERT demonstrate the effectiveness of using pre-trained language models (LMs) on various natural language processing tasks. However, LM fine-tuning often suffers from catastrophic forgetting when applied to resource-rich tasks. In…
In Natural Language Processing (NLP), Machine Reading Comprehension (MRC) is the task of answering a question based on a given context. To handle questions in the medical domain, modern language models such as BioBERT, SciBERT and even…
In this paper, we present a study of the recent advancements which have helped bring Transfer Learning to NLP through the use of semi-supervised training. We discuss cutting-edge methods and architectures such as BERT, GPT, ELMo, ULMFit…
Contextual word embedding models, such as BioBERT and Bio_ClinicalBERT, have achieved state-of-the-art results in biomedical natural language processing tasks by focusing their pre-training process on domain-specific corpora. However, such…
This work presents biomedical and clinical language models for Spanish by experimenting with different pretraining choices, such as masking at word and subword level, varying the vocabulary size and testing with domain data, looking for…
Detecting protein-protein interactions (PPIs) is crucial for understanding genetic mechanisms, disease pathogenesis, and drug design. However, with the fast-paced growth of biomedical literature, there is a growing need for automated and…
Biomedical literature is a rapidly expanding field of science and technology. Classification of biomedical texts is an essential part of biomedicine research, especially in the field of biology. This work proposes the fine-tuned DistilBERT,…
This open access book provides a comprehensive overview of the state of the art in research and applications of Foundation Models and is intended for readers familiar with basic Natural Language Processing (NLP) concepts. Over the recent…
Biomedical literature and clinical narratives pose multifaceted challenges for natural language understanding, from precise entity extraction and document synthesis to multi-step diagnostic reasoning. This study extends a unified benchmark…
In recent years, researchers tend to pre-train ever-larger language models to explore the upper limit of deep models. However, large language model pre-training costs intensive computational resources and most of the models are trained from…
Pre-trained language models like BERT achieve superior performances in various NLP tasks without explicit consideration of syntactic information. Meanwhile, syntactic information has been proved to be crucial for the success of NLP…
This paper presents several BERT-based models for Russian language biomedical text mining (RuBioBERT, RuBioRoBERTa). The models are pre-trained on a corpus of freely available texts in the Russian biomedical domain. With this pre-training,…
The current UMLS (Unified Medical Language System) Metathesaurus construction process for integrating over 200 biomedical source vocabularies is expensive and error-prone as it relies on the lexical algorithms and human editors for deciding…
This paper presents EstBERT, a large pretrained transformer-based language-specific BERT model for Estonian. Recent work has evaluated multilingual BERT models on Estonian tasks and found them to outperform the baselines. Still, based on…
Background: Identifying relationships between clinical events and temporal expressions is a key challenge in meaningfully analyzing clinical text for use in advanced AI applications. While previous studies exist, the state-of-the-art…