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Augmenting large language models (LLMs) with browsing tools substantially improves their potential as deep search agents to solve complex, real-world tasks. Yet, open LLMs still perform poorly in such settings due to limited long-horizon…

Computation and Language · Computer Science 2025-10-15 Rui Lu , Zhenyu Hou , Zihan Wang , Hanchen Zhang , Xiao Liu , Yujiang Li , Shi Feng , Jie Tang , Yuxiao Dong

Unlocking deep and interpretable biological reasoning from complex genomic data remains a major AI challenge limiting scientific progress. While current DNA foundation models excel at representing sequences, they struggle with multi-step…

Catalysts are essential for accelerating chemical reactions and enhancing selectivity, which is crucial for the sustainable production of energy, materials, and bioactive compounds. Catalyst discovery is fundamental yet challenging in…

Computational Engineering, Finance, and Science · Computer Science 2025-02-20 Yuanyuan Xu , Hanchen Wang , Wenjie Zhang , Lexing Xie , Yin Chen , Flora Salim , Ying Zhang , Justin Gooding , Toby Walsh

Logical reasoning is a pivotal component in the field of artificial intelligence. Proof planning, particularly in contexts requiring the validation of explanation accuracy, continues to present challenges. The recent advancement of large…

Computation and Language · Computer Science 2025-10-31 Ying Su , Mingwen Liu , Zhijiang Guo

The past few years has witnessed specialized large language model (LLM) inference systems, such as vLLM, SGLang, Mooncake, and DeepFlow, alongside rapid LLM adoption via services like ChatGPT. Driving these system design efforts is the…

Databases · Computer Science 2025-06-30 James Pan , Guoliang Li

Large Language Models (LLMs) have made significant progress in dialogue, yet redundant memory contexts severely limit their effectiveness in long-term dialogue agents. External memory systems have been proposed to improve memory…

Information Retrieval · Computer Science 2026-05-28 Tan Wang , Yunwei Dong

DeepSeek-V3 and DeepSeek-R1 are leading open-source Large Language Models (LLMs) for general-purpose tasks and reasoning, achieving performance comparable to state-of-the-art closed-source models from companies like OpenAI and Anthropic --…

Machine Learning · Computer Science 2025-03-17 Chengen Wang , Murat Kantarcioglu

Deep iterative chain-of-thought (CoT) reasoning enables LLMs to tackle complex tasks by progressively activating relevant pre-trained knowledge. However, it faces challenges in ensuring continual improvement and determining a stopping…

Artificial Intelligence · Computer Science 2025-02-19 Zongqian Wu , Tianyu Li , Baoduo Xu , Jiaying Yang , Mengmeng Zhan , Xiaofeng Zhu , Lei Feng

The problem of retrosynthetic planning can be framed as one player game, in which the chemist (or a computer program) works backwards from a molecular target to simpler starting materials though a series of choices regarding which reactions…

Machine Learning · Computer Science 2019-01-23 John S. Schreck , Connor W. Coley , Kyle J. M. Bishop

Retrosynthesis analysis is a critical task in organic chemistry central to many important industries. Previously, various machine learning approaches have achieved promising results on this task by representing output molecules as strings…

Quantitative Methods · Quantitative Biology 2022-09-20 Lei Fang , Junren Li , Ming Zhao , Li Tan , Jian-Guang Lou

Large Language Models (LLMs), despite their remarkable capabilities, rely on singular, pre-dominant reasoning paradigms, hindering their performance on intricate problems that demand diverse cognitive strategies. To address this, we…

Computation and Language · Computer Science 2025-09-29 Zishan Ahmad , Saisubramaniam Gopalakrishnan

Although most of the automated theorem-proving approaches depend on formal proof systems, informal theorem proving can align better with large language models' (LLMs) strength in natural language processing. In this work, we identify a…

Artificial Intelligence · Computer Science 2026-04-20 Yunhe Li , Hao Shi , Bowen Deng , Wei Wang , Mengzhe Ruan , Hanxu Hou , Zhongxiang Dai , Siyang Gao , Chao Wang , Shuang Qiu , Linqi Song

The main target of retrosynthesis is to recursively decompose desired molecules into available building blocks. Existing template-based retrosynthesis methods follow a template selection stereotype and suffer from limited training…

Chemical Physics · Physics 2022-12-26 Chaochao Yan , Peilin Zhao , Chan Lu , Yang Yu , Junzhou Huang

Recent advancements in large language models (LLMs) underscore the need for stronger reasoning capabilities to solve complex problems effectively. While Chain-of-Thought (CoT) reasoning has been a step forward, it remains insufficient for…

Computation and Language · Computer Science 2025-07-14 Matan Vetzler , Koren Lazar , Guy Uziel , Eran Hirsch , Ateret Anaby-Tavor , Leshem Choshen

Dynamic programming (DP) is a fundamental method in operations research, but formulating DP models has traditionally required expert knowledge of both the problem context and DP techniques. Large Language Models (LLMs) offer the potential…

Artificial Intelligence · Computer Science 2026-04-02 Chenyu Zhou , Jingyuan Yang , Linwei Xin , Yitian Chen , Ziyan He , Dongdong Ge

We propose a novel framework that provides constructive feedback to an LLM in the "guess-and-check" paradigm by formally verifying its own thinking process and detecting local reasoning errors. We apply this framework to the loop invariant…

Programming Languages · Computer Science 2026-05-19 Tianchi Li , Zhenyu Yan , Junhao Liu , Peng Di , Xin Zhang

The deployment and scaling of large language models (LLMs) have become critical as they permeate various applications, demanding high-throughput and low-latency serving systems. Existing frameworks struggle to balance these requirements,…

Despite the recent advancement in Retrieval-Augmented Generation (RAG) systems, most retrieval methodologies are often developed for factual retrieval, which assumes query and positive documents are semantically similar. In this paper, we…

Information Retrieval · Computer Science 2025-04-10 Luo Ji , Feixiang Guo , Teng Chen , Qingqing Gu , Xiaoyu Wang , Ningyuan Xi , Yihong Wang , Peng Yu , Yue Zhao , Hongyang Lei , Zhonglin Jiang , Yong Chen

Within the evolving landscape of deep learning, the dilemma of data quantity and quality has been a long-standing problem. The recent advent of Large Language Models (LLMs) offers a data-centric solution to alleviate the limitations of…

Computation and Language · Computer Science 2024-06-24 Lin Long , Rui Wang , Ruixuan Xiao , Junbo Zhao , Xiao Ding , Gang Chen , Haobo Wang

Large Language Models (LLMs) can aid synthesis planning in chemistry, but standard prompting methods often yield hallucinated or outdated suggestions. We study LLM interactions with a reaction knowledge graph by casting reaction path…

Artificial Intelligence · Computer Science 2026-01-23 Olga Bunkova , Lorenzo Di Fruscia , Sophia Rupprecht , Artur M. Schweidtmann , Marcel J. T. Reinders , Jana M. Weber
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