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Graph contrastive learning (GCL) has become a powerful tool for learning graph data, but its scalability remains a significant challenge. In this work, we propose a simple yet effective training framework called Structural Compression…

Machine Learning · Computer Science 2024-05-10 Shengzhong Zhang , Wenjie Yang , Xinyuan Cao , Hongwei Zhang , Zengfeng Huang

Differentially private (DP) contrastive learning aims to learn general-purpose representations from sensitive data, alleviating the privacy leakage concerns of organizations deploying or sharing embedding models trained on private user…

Cryptography and Security · Computer Science 2026-04-30 Kecen Li , Chen Gong , Zinan Lin , Tianhao Wang , Xiaokui Xiao

Efficient and effective drug-target binding affinity (DTBA) prediction is a challenging task due to the limited computational resources in practical applications and is a crucial basis for drug screening. Inspired by the good representation…

Biomolecules · Quantitative Biology 2022-06-15 Shuke Zhang , Yanzhao Jin , Tianmeng Liu , Qi Wang , Zhaohui Zhang , Shuliang Zhao , Bo Shan

Applying deep learning concepts from image detection and graph theory has greatly advanced protein-ligand binding affinity prediction, a challenge with enormous ramifications for both drug discovery and protein engineering. We build upon…

Biomolecules · Quantitative Biology 2023-12-05 Gregory W. Kyro , Rafael I. Brent , Victor S. Batista

In business analysis, providing effective recommendations is essential for enhancing company profits. The utilization of graph-based structures, such as bipartite graphs, has gained popularity for their ability to analyze complex data…

Information Retrieval · Computer Science 2025-01-14 Jiayang Wu , Wensheng Gan , Huashen Lu , Philip S. Yu

The identification of novel drug-target (DT) interactions is a substantial part of the drug discovery process. Most of the computational methods that have been proposed to predict DT interactions have focused on binary classification, where…

Machine Learning · Statistics 2019-02-06 Hakime Öztürk , Elif Ozkirimli , Arzucan Özgür

Graph Contrastive Learning (GCL) has shown superior performance in representation learning in graph-structured data. Despite their success, most existing GCL methods rely on prefabricated graph augmentation and homophily assumptions. Thus,…

Machine Learning · Computer Science 2024-02-27 Teng Xiao , Huaisheng Zhu , Zhengyu Chen , Suhang Wang

Graph clustering, a classical task in graph learning, involves partitioning the nodes of a graph into distinct clusters. This task has applications in various real-world scenarios, such as anomaly detection, social network analysis, and…

Machine Learning · Computer Science 2024-08-09 Xiaoyang Ji , Yuchen Zhou , Haofu Yang , Shiyue Xu , Jiahao Li

There is great interest to develop artificial intelligence-based protein-ligand affinity models due to their immense applications in drug discovery. In this paper, PointNet and PointTransformer, two pointwise multi-layer perceptrons have…

Biomolecules · Quantitative Biology 2021-07-12 Yeji Wang , Shuo Wu , Yanwen Duan , Yong Huang

Recommender systems (RecSys) are essential for online platforms, providing personalized suggestions to users within a vast sea of information. Self-supervised graph learning seeks to harness high-order collaborative filtering signals…

Information Retrieval · Computer Science 2025-07-18 Weizhi Zhang , Liangwei Yang , Zihe Song , Henrry Peng Zou , Ke Xu , Yuanjie Zhu , Philip S. Yu

Graph contrastive learning defines a contrastive task to pull similar instances close and push dissimilar instances away. It learns discriminative node embeddings without supervised labels, which has aroused increasing attention in the past…

Machine Learning · Computer Science 2023-04-25 Lin Shu , Chuan Chen , Zibin Zheng

Domain adaptive semantic segmentation aims to generate accurate and dense predictions for an unlabeled target domain by leveraging a supervised model trained on a labeled source domain. The prevalent self-training approach involves…

Computer Vision and Pattern Recognition · Computer Science 2024-06-28 Nazanin Moradinasab , Laura S. Shankman , Rebecca A. Deaton , Gary K. Owens , Donald E. Brown

Medical datasets and especially biobanks, often contain extensive tabular data with rich clinical information in addition to images. In practice, clinicians typically have less data, both in terms of diversity and scale, but still wish to…

Computer Vision and Pattern Recognition · Computer Science 2023-03-31 Paul Hager , Martin J. Menten , Daniel Rueckert

Recent methods utilize graph contrastive Learning within graph-structured user-item interaction data for collaborative filtering and have demonstrated their efficacy in recommendation tasks. However, they ignore that the difference relation…

Information Retrieval · Computer Science 2024-03-25 Jiaheng Yu , Jing Li , Yue He , Kai Zhu , Shuyi Zhang , Wen Hu

Graph Contrastive Learning (GCL) aims to learn node representations by aligning positive pairs and separating negative ones. However, few of researchers have focused on the inner law behind specific augmentations used in graph-based…

Machine Learning · Computer Science 2024-12-25 Jingyu Liu , Huayi Tang , Yong Liu

Graph Contrastive Learning (GCL) is a powerful self-supervised learning framework that performs data augmentation through graph perturbations, with growing applications in the analysis of biological networks such as Gene Regulatory Networks…

Machine Learning · Computer Science 2026-02-20 Sho Oshima , Yuji Okamoto , Taisei Tosaki , Ryosuke Kojima

Pseudo-labels are confident predictions made on unlabeled target data by a classifier trained on labeled source data. They are widely used for adapting a model to unlabeled data, e.g., in a semi-supervised learning setting. Our key insight…

Machine Learning · Computer Science 2022-04-22 Xudong Wang , Zhirong Wu , Long Lian , Stella X. Yu

Multi-label image classification presents a challenging task in many domains, including computer vision and medical imaging. Recent advancements have introduced graph-based and transformer-based methods to improve performance and capture…

Computer Vision and Pattern Recognition · Computer Science 2024-04-15 Ahmad Sajedi , Samir Khaki , Yuri A. Lawryshyn , Konstantinos N. Plataniotis

knowledge graph-based recommendation methods have achieved great success in the field of recommender systems. However, over-reliance on high-quality knowledge graphs is a bottleneck for such methods. Specifically, the long-tailed…

Information Retrieval · Computer Science 2023-10-03 Yubo Gao , Haotian Wu

Graph classification is a critical research problem in many applications from different domains. In order to learn a graph classification model, the most widely used supervision component is an output layer together with classification loss…

Machine Learning · Computer Science 2021-01-15 Yuxiang Ren , Jiyang Bai , Jiawei Zhang
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