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The mapping of plant biodiversity represents a fundamental stage in establishing conservation priorities, particularly in identifying groups of species that share ecological requirements or evolutionary histories. This is often achieved by…

Populations and Evolution · Quantitative Biology 2025-07-09 Maxime Lenormand , Jean-Baptiste Féret , Guillaume Papuga , Samuel Alleaume , Sandra Luque

Biodiversity research requires complete and detailed information to study ecosystem dynamics at different scales. Employing data-driven methods like Machine Learning is getting traction in ecology and more specific biodiversity, offering…

Quantitative Methods · Quantitative Biology 2025-10-27 Stylianos Stasinos , Martino Mensio , Elena Lazovik , Athanasios Trantas

Standard multivariate analysis methods aim to identify and summarize the main structures in large data sets containing the description of a number of observations by several variables. In many cases, spatial information is also available…

Applications · Statistics 2012-03-01 Stéphane Dray , Thibaut Jombart

We present new theoretical and empirical results on the probability distributions of species persistence times in natural ecosystems. Persistence times, defined as the timespans occurring between species' colonization and local extinction…

Populations and Evolution · Quantitative Biology 2012-03-21 S. Suweis , E. Bertuzzo , L. Mari , I. Rodriguez-Iturbe , A. Maritan , A. Rinaldo

Understanding factors that shape biodiversity and species coexistence across scales is of utmost importance in ecology, both theoretically and for conservation policies. Species-area relationships (SARs), measuring how the number of…

Populations and Evolution · Quantitative Biology 2012-06-06 Massimo Cencini , Simone Pigolotti , Miguel A. Muñoz

Understanding the mechanisms that sustain high biodiversity remains a central challenge. MacArthur's classical consumer-resource model (MCRM) suggests that consumer diversity is limited by the number of available resources, yet empirical…

Populations and Evolution · Quantitative Biology 2025-08-25 Seong-Gyu Yang , Hye Jin Park

Access to below-canopy volumetric vegetation data is crucial for understanding ecosystem dynamics. We address the long-standing limitation of remote sensing to penetrate deep into dense canopy layers. LiDAR and radar are currently…

Computer Vision and Pattern Recognition · Computer Science 2025-08-28 Mohamed Youssef , Jian Peng , Oliver Bimber

Large-scale, volunteer-collected datasets of community-identified natural world imagery like iNaturalist have enabled marked performance gains for fine-grained visual classification of species using machine learning methods. However, such…

Computer Vision and Pattern Recognition · Computer Science 2025-05-05 Elena Sierra , Lauren E. Gillespie , Salim Soltani , Moises Exposito-Alonso , Teja Kattenborn

Microclimate models are essential for linking climate to ecological processes, yet most physically based frameworks estimate temperature independently for each spatial unit and rely on simplified representations of lateral heat exchange. As…

Machine Learning · Computer Science 2026-03-17 Idan Sulami , Alon Itzkovitch , Michael R. Kearney , Moni Shahar , Ofir Levy

We discuss species distribution models (SDM) for biodiversity studies in ecology. SDM plays an important role to estimate abundance of a species based on environmental variables that are closely related with the habitat of the species. The…

Applications · Statistics 2023-05-01 Osamu Komori , Yusuke Saigusa , Shinto Eguchi

This paper describes a cascading multimodal pipeline for high-resolution biodiversity mapping across Europe, integrating species distribution modeling, biodiversity indicators, and habitat classification. The proposed pipeline first…

Artificial Intelligence · Computer Science 2025-04-08 César Leblanc , Lukas Picek , Benjamin Deneu , Pierre Bonnet , Maximilien Servajean , Rémi Palard , Alexis Joly

Recently, many methods to interpret and visualize deep neural network predictions have been proposed and significant progress has been made. However, a more class-discriminative and visually pleasing explanation is required. Thus, this…

Computer Vision and Pattern Recognition · Computer Science 2020-01-06 Dasom Seo , Kanghan Oh , Il-Seok Oh

Underwater surveys conducted using divers or robots equipped with customized camera payloads can generate a large number of images. Manual review of these images to extract ecological data is prohibitive in terms of time and cost, thus…

Computer Vision and Pattern Recognition · Computer Science 2020-09-22 Scarlett Raine , Ross Marchant , Peyman Moghadam , Frederic Maire , Brett Kettle , Brano Kusy

Habitats integrate the abiotic conditions, vegetation composition and structure that support biodiversity and sustain nature's contributions to people. Most habitats face mounting pressures from human activities, which requires accurate,…

Biodiversity conservation depends on accurate, up-to-date information about wildlife population distributions. Motion-activated cameras, also known as camera traps, are a critical tool for population surveys, as they are cheap and…

Machine Learning · Computer Science 2019-10-23 Mohammad Sadegh Norouzzadeh , Dan Morris , Sara Beery , Neel Joshi , Nebojsa Jojic , Jeff Clune

Accurate biodiversity monitoring is essential for effective environmental policy, yet current practices often rely on arbitrarily defined ecosystems, communities, and ad-hoc indicator species, limiting cost-efficiency and reproducibility.…

Applications · Statistics 2025-12-02 Braden Scherting , Otso Ovaskainen , Tomas Roslin , David B. Dunson

Systematic sampling is often used to select plot locations for forest inventory estimation. However, it is not possible to derive a design-unbiased variance estimator for a systematic sample using one random start. As a result, many forest…

Applications · Statistics 2018-10-22 Chad Babcock , Andrew O. Finley , Timothy G. Gregoire , Hans-Erik Andersen

Deep-feature-based perceptual similarity models have demonstrated strong alignment with human visual perception in Image Quality Assessment (IQA). However, most existing approaches operate at a single spatial scale, implicitly assuming that…

Computer Vision and Pattern Recognition · Computer Science 2026-04-22 Danling Kang , Xue-Hua Chen , Bin Liu , Keke Zhang , Weiling Chen , Tiesong Zhao

Multivariate spatially-oriented data sets are prevalent in the environmental and physical sciences. Scientists seek to jointly model multiple variables, each indexed by a spatial location, to capture any underlying spatial association for…

Methodology · Statistics 2021-08-19 Lu Zhang , Sudipto Banerjee

The post-2020 global biodiversity framework needs ambitious, research-based targets. Estimating the accelerated extinction risk due to climate change is critical. The International Union for Conservation of Nature (IUCN) measures the…

Populations and Evolution · Quantitative Biology 2024-01-12 Joaquim Estopinan , Pierre Bonnet , Maximilien Servajean , François Munoz , Alexis Joly