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We review a recent trend in computational systems biology which aims at using pattern recognition algorithms to infer the structure of large-scale biological networks from heterogeneous genomic data. We present several strategies that have…

Quantitative Methods · Quantitative Biology 2008-09-22 Jean-Philippe Vert

The aim of this paper is to discuss a recent result which shows that probabilistic inference in the presence of (unknown) causal mechanisms can be tractable for models that have traditionally been viewed as intractable. This result was…

Artificial Intelligence · Computer Science 2022-02-08 Adnan Darwiche

Mathematical modelling is a widely used approach to understand and interpret clinical trial data. This modelling typically involves fitting mechanistic mathematical models to data from individual trial participants. Despite the widespread…

Graphical models are used in many applications such as medical diagnostic, computer security, etc. More and more often, the estimation of such models has to be performed on several predefined strata of the whole population. For instance, in…

Methodology · Statistics 2017-10-02 Nadim Ballout , Vivian Viallon

Various work has suggested that the memorability of an image is consistent across people, and thus can be treated as an intrinsic property of an image. Using computer vision models, we can make specific predictions about what people will…

Computer Vision and Pattern Recognition · Computer Science 2022-01-11 Coen D. Needell , Wilma A. Bainbridge

Parameter identifiability describes whether, for a given differential model, one can determine parameter values from model equations. Knowing global or local identifiability properties allows construction of better practical experiments to…

Mathematical Software · Computer Science 2021-07-02 Ilia Ilmer , Alexey Ovchinnikov , Gleb Pogudin

Background and objective: Uncertainty quantification is a pivotal field that contributes to realizing reliable and robust systems. It becomes instrumental in fortifying safe decisions by providing complementary information, particularly…

Image and Video Processing · Electrical Eng. & Systems 2024-03-19 Jamil Fayyad , Shadi Alijani , Homayoun Najjaran

Can models generalize attribute knowledge across semantically and perceptually dissimilar categories? While prior work has addressed attribute prediction within narrow taxonomic or visually similar domains, it remains unclear whether…

Computer Vision and Pattern Recognition · Computer Science 2025-11-27 Liviu Nicolae Fircă , Antonio Bărbălau , Dan Oneata , Elena Burceanu

Latent feature models (LFM)s are widely employed for extracting latent structures of data. While offering high, parameter estimation is difficult with LFMs because of the combinational nature of latent features, and non-identifiability is a…

Machine Learning · Computer Science 2018-09-27 Ryota Suzuki , Shingo Takahashi , Murtuza Petladwala , Shigeru Kohmoto

This paper makes a selective survey on the recent development of the factor model and its application on statistical learnings. We focus on the perspective of the low-rank structure of factor models, and particularly draws attentions to…

Econometrics · Economics 2020-09-23 Jianqing Fan , Kunpeng Li , Yuan Liao

We introduce a subclass of Lie symmetries, called parameter-state symmetries, to analyse the local structural identifiability and observability of mechanistic models consisting of state-dependent ODEs with observed outputs. These symmetries…

Dynamical Systems · Mathematics 2026-03-13 Johannes G. Borgqvist , Alexander P. Browning , Fredrik Ohlsson , Ruth E. Baker

Decomposable dependency models possess a number of interesting and useful properties. This paper presents new characterizations of decomposable models in terms of independence relationships, which are obtained by adding a single axiom to…

Artificial Intelligence · Computer Science 2014-11-17 L. M. deCampos

Anatomical consistency in biomarker segmentation is crucial for many medical image analysis tasks. A promising paradigm for achieving anatomically consistent segmentation via deep networks is incorporating pixel connectivity, a basic…

Image and Video Processing · Electrical Eng. & Systems 2023-04-04 Ziyun Yang , Sina Farsiu

We present a new approach for predictive modeling and its uncertainty quantification for mechanical systems, where coarse-grained models such as constitutive relations are derived directly from observation data. We explore the use of a…

Numerical Analysis · Mathematics 2020-06-24 Daniel Z. Huang , Kailai Xu , Charbel Farhat , Eric Darve

Probabilistic model checking is an approach to the formal modelling and analysis of stochastic systems. Over the past twenty five years, the number of different formalisms and techniques developed in this field has grown considerably, as…

Logic in Computer Science · Computer Science 2025-09-17 Marta Kwiatkowska , Gethin Norman , David Parker

In this work, we present a new approach for constructing models for correlation matrices with a user-defined graphical structure. The graphical structure makes correlation matrices interpretable and avoids the quadratic increase of…

Compartmental models based on tracer mass balance are extensively used in clinical and pre-clinical nuclear medicine in order to obtain quantitative information on tracer metabolism in the biological tissue. This paper is the second of a…

Medical Physics · Physics 2018-09-14 Delbary Fabrice , Garbarino Sara

Human skull identification is an arduous task, traditionally requiring the expertise of forensic artists and anthropologists. This paper is an effort to automate the process of matching skull images to digital face images, thereby…

Computer Vision and Pattern Recognition · Computer Science 2018-08-15 Maneet Singh , Shruti Nagpal , Richa Singh , Mayank Vatsa , Afzel Noore

Medical vision foundational models are used for a wide variety of tasks, including medical image segmentation and registration. This work evaluates the ability of these models to predict disease progression using a simple linear probe. We…

Image and Video Processing · Electrical Eng. & Systems 2025-03-24 Basar Demir , Soumitri Chattopadhyay , Thomas Hastings Greer , Boqi Chen , Marc Niethammer

Networks effectively capture interactions among components of complex systems, and have thus become a mainstay in many scientific disciplines. Growing evidence, especially from biology, suggest that networks undergo changes over time, and…

Methodology · Statistics 2020-03-10 Ali Shojaie