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A spatial three level food web model with a closed nutrient cycle is presented and analyzed via Monte Carlo simulations. The time evolution of the model reveals two asymptotic states: an absorbing one with all species being extinct, and a…

Populations and Evolution · Quantitative Biology 2015-06-12 Janusz Szwabiński

Many complex ecosystems, such as those formed by multiple microbial taxa, involve intricate interactions amongst various sub-communities. The most basic relationships are frequently modeled as co-occurrence networks in which the nodes…

Machine Learning · Statistics 2017-03-09 Diego Hernán Díaz Martínez , Christine H. Lee , Peter T. Kim , Washington Mio

We use archival UV absorption-line data from HST/STIS to statistically analyse the absorption characteristics of the high-velocity clouds (HVCs) in the Galactic halo towards more than 40 extragalactic background sources. We determine…

Cosmology and Nongalactic Astrophysics · Physics 2015-06-12 Peter Herenz , Philipp Richter , Jane C. Charlton , Joseph R. Masiero

Roots provide basic functions to plants such as water/nutrient uptake and anchoring in soil. The growth and development of root systems contribute to colonizing the surrounding soil and optimizing the access to resources. It is usually…

Soft Condensed Matter · Physics 2019-04-24 M. Fakih , J. -Y. Delenne , F. Radjai , T. Fourcaud

A sponge subjected to an increase of the outside fluid pressure expands its volume but nearly mantains its true density and thus gives way to an increase of the interstitial volume. This behaviour, not yet properly described by solid-fluid…

Classical Physics · Physics 2010-07-13 Giulio Sciarra , Francesco dell'Isola , Kolumban Hutter

Fourier Transform Interferometry (FTI) is an appealing Hyperspectral (HS) imaging modality for many applications demanding high spectral resolution, e.g., in fluorescence microscopy. However, the effective resolution of FTI is limited by…

Information Theory · Computer Science 2019-01-31 A. Moshtaghpour , L. Jacques , V. Cambareri , P. Antoine , M. Roblin

We investigate how a filter media microstructure influences filtration performance. We derive a theory that generalizes classical multiscale models for regular structures to account for filter media with more realistic microstructures,…

Fluid Dynamics · Physics 2019-01-30 Galina Printsypar , Maria Bruna , Ian M. Griffiths

Reliance on images for dietary assessment is an important strategy to accurately and conveniently monitor an individual's health, making it a vital mechanism in the prevention and care of chronic diseases and obesity. However, image-based…

Computer Vision and Pattern Recognition · Computer Science 2026-02-06 Gautham Vinod , Fengqing Zhu

Understanding interactions between chiral active particles -- self-propelling and self-rotating entities -- is crucial for uncovering how chiral active matter self-organizes into dynamic structures. Although fluctuation-induced forces in…

Soft Condensed Matter · Physics 2025-07-25 Hashem Fatemi , Hamidreza Khalilian , Jalal Sarabadani , M. Reza Shaebani

The emerging field of Molecular Communication (MC) aims to characterize biological-based signaling environment through information that are encoded into molecules. Since the birth of this field, a number of different applications and…

Molecular Networks · Quantitative Biology 2021-07-28 Dixon Vimalajeewa , Sasitharan Balasubramaniam

Light-field microscopy represents a promising solution for microscopic volumetric imaging, thanks to its capability to encode information on multiple planes in a single acquisition. This is achieved through its peculiar simultaneous capture…

Many biological tissues feature a heterogeneous network of fibers whose tensile and bending rigidity contribute substantially to these tissues' elastic properties. Rigidity percolation has emerged as a important paradigm for relating these…

Ants are highly capable of grasping objects in clutter, and we have recently observed that this involves substantial use of their forelegs. The forelegs, more specifically the tarsi, have high friction microstructures (setal pads), are…

Robotics · Computer Science 2026-02-03 Mohamed Sorour , Barbara Webb

Bacteria populate the colon where they replicate and migrate in response to nutrient availability. Here I model the colon bacterial population as a sandpile model, the colon-pile. Sand addition mimics bacterial replication and grains…

Populations and Evolution · Quantitative Biology 2020-03-09 Alexei Vazquez

This document describes a convention for compressing n-dimensional images and storing the resulting byte stream in a variable-length column in a FITS binary table. The FITS file structure outlined here is independent of the specific data…

Instrumentation and Methods for Astrophysics · Physics 2012-01-09 Richard L. White , Perry Greenfield , William Pence , Doug Tody , Rob Seaman

Confined thin structures are ubiquitous in nature. Spatial and length constraints have led to a number of novel packing strategies at both the micro-scale, as when DNA packages inside a capsid, and the macro-scale, seen in plant root…

Soft Condensed Matter · Physics 2019-11-28 David J. Schunter, , Regina K. Czech , Douglas P. Holmes

We enumerate all local minima of the energy landscape for model rigid adsorbates characterized by three or four equivalent binding sites (e.g., thiol groups) on a close-packed (111) surface of a face-centered-cubic crystal. We show that the…

Statistical Mechanics · Physics 2016-02-12 David M. Huang , Peter Harrowell

We investigate the role of friction in compaction and segregation of granular materials by combining Edwards' thermodynamic hypothesis with a simple mechanical model and mean-field based geometrical calculations. Systems of single species…

Statistical Mechanics · Physics 2007-05-23 Yair Srebro , Dov Levine

Grid cells in the brain respond when an animal occupies a periodic lattice of "grid fields" during spatial navigation. The grid scale varies along the dorso-ventral axis of the entorhinal cortex. We propose that the grid system minimizes…

Neurons and Cognition · Quantitative Biology 2018-05-14 Xue-Xin Wei , Jason Prentice , Vijay Balasubramanian

We investigate the dynamical and structural properties of absorbing phase transitions (APTs) within granular systems. Specifically, we examine a model for vibrofluidized systems of spherical grains, which undergo a transition from a state…

Soft Condensed Matter · Physics 2025-12-24 Raphael Maire , Andrea Plati , Frank Smallenburg , Giuseppe Foffi