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We present a theoretical and experimental investigation of slow drainage in porous media with a gradient in the grains size (and hence in the typical pores' throats), in an external gravitational field. We mathematically show that such…

Soft Condensed Matter · Physics 2022-03-30 Tom Vincent-Dospital , Marcel Moura , Renaud Toussaint , Knut Jørgen Måløy

Forced desorption of a semiflexible polymer chain on a solid substrate is theoretically investigated. The pulling force versus displacement is studied for different adsorption energy and persistence length P. It is found that the…

Statistical Mechanics · Physics 2015-06-19 Pui-Man Lam , Yi Zhen

A low density film on a flat surface is described by an expansion involving the first four virial coefficients. The first coefficient (alone) yields the Henry's law regime, while the next three correct for the effects of interactions. The…

Statistical Mechanics · Physics 2009-11-10 Raluca A. Trasca , Milton W. Cole , Renee D. Diehl

Endoscopy provides a major contribution to the diagnosis of the Gastrointestinal Tract (GIT) diseases. With Colon Endoscopy having its certain limitations, Wireless Capsule Endoscopy is gradually taking over it in the terms of ease and…

Image and Video Processing · Electrical Eng. & Systems 2020-09-03 Vanshika Vats , Pooja Goel , Amodini Agarwal , Nidhi Goel

The migration of active particles in slowly moving, crowded, and heterogeneous media is fundamental to various biological processes and technological applications, such as cargo transport. In this study, we numerically investigate the…

Soft Condensed Matter · Physics 2024-12-04 Meng-Yuan Li , Ning Zheng , Yan-Wei Li

Nickel bulk, the low index surfaces and the adsorbate systems Ni(111) (root 3 x root3)-Cl, and Ni(111)(2 x 2)-K are studied with gradient corrected density functional calculations. It is demonstrated that an approach based on Gaussian type…

Materials Science · Physics 2009-11-10 K. Doll

Digestion in the small intestine is the result of complex mechanical and biological phenomena which can be modelled at different scales. In a previous article, we introduced a system of ordinary differential equations for describing the…

Analysis of PDEs · Mathematics 2011-09-12 Masoomeh Taghipoor , Guy Barles , Christine Georgelin , Jean-René Licois , Philippe Lescoat

I consider how cell shape and environmental geometry affect the rate of nutrient capture and the consequent maximum growth rate of a cell, focusing on rod-like species like \textit{E.\ coli}. Simple modeling immediately implies that it is…

Biological Physics · Physics 2014-03-27 Jonathan Landy

One-dimensional light harvesting structures with a realistic geometry nano-patterned on an opaque metallic film are optimized to render high transmission efficiencies at optical and infrared frequencies. Simple design rules are developed…

We present a mechanical model of tissue homeostasis that is specialised to the intestinal crypt. Growth and deformation of the crypt, idealised as a line of cells on a substrate, are modelled using morphoelastic rod theory. Alternating…

Biological Physics · Physics 2020-06-02 Axel A. Almet , Helen M. Byrne , Philip K. Maini , Derek E. Moulton

The gut microbiota features important genetic diversity, and the specific spatial features of the gut may shape evolution within this environment. We investigate the fixation probability of neutral bacterial mutants within a minimal model…

Biological Physics · Physics 2022-01-03 Darka Labavić , Claude Loverdo , Anne-Florence Bitbol

We consider a decluttering problem where multiple rigid convex polygonal objects rest in randomly placed positions and orientations on a planar surface and must be efficiently transported to a packing box using both single and multi-object…

Nutrient gradients and limitations play a pivotal role in the life of all microbes, both in their natural habitat as well as in artificial, microfluidic systems. Spatial concentration gradients of nutrients in densely packed cell…

Celiac disease is an autoimmune disorder triggered by the consumption of gluten. It causes damage to the villi, the finger-like projections in the small intestine that are responsible for nutrient absorption. Additionally, the crypts, which…

Computer Vision and Pattern Recognition · Computer Science 2024-12-03 Aayush Kumar Tyagi , Vaibhav Mishra , Ashok Tiwari , Lalita Mehra , Prasenjit Das , Govind Makharia , Prathosh AP , Mausam

Bile, the central metabolic product of the liver, is secreted by hepatocytes into bile canaliculi (BC), tubular subcellular structures of 0.5-2 $\mu$m diameter which are formed by the apical membranes of juxtaposed hepatocytes. BC…

Tissues and Organs · Quantitative Biology 2020-12-24 Lutz Brusch , Yannis Kalaidzidis , Kirstin Meyer , Ivo F. Sbalzarini , Marino Zerial

Many foraging microorganisms rely upon cellular transport networks to deliver nutrients, fluid and organelles between different parts of the organism. Networked organisms ranging from filamentous fungi to slime molds demonstrate a…

Adaptation and Self-Organizing Systems · Physics 2020-12-08 Cassidy Mentus , Marcus Roper

Effective biological utilization of wood biomass is necessary worldwide. Since several insect larvae can use wood biomass as a nutrient source, studies on their digestive mechanism are expected to speculate a novel rule in wood biomass…

The silicate cross section peak near 10um produces emission and absorption features in the spectra of dusty galactic nuclei observed with the Spitzer Space Telescope. Especially in ultraluminous infrared galaxies, the observed absorption…

Astrophysics · Physics 2010-11-11 N. A. Levenson , M. M. Sirocky , L. Hao , H. W. W. Spoon , J. A. Marshall , M. Elitzur , J. R. Houck

Cardiovascular networks span the body by branching across many generations of vessels. The resulting structure delivers blood over long distances to supply all cells with oxygen via the relatively short-range process of diffusion at the…

Medical Physics · Physics 2016-06-15 David Hunt , Van M. Savage

Protein fibril accumulation at interfaces is an important step in many physiological processes and neurodegenerative diseases as well as in designing materials. Here we show, using $\beta$-lactoglobulin fibrils as a model, that semiflexible…

Biomolecules · Quantitative Biology 2015-05-20 Sophia Jordens , Emily E. Riley , Ivan Usov , Lucio Isa , Peter D. Olmsted , Raffaele Mezzenga