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This paper develops and analyzes optimization models for rapid detection of viruses in large contact networks. In the model, a virus spreads in a stochastic manner over an undirected connected graph, under various assumptions on the spread…

Optimization and Control · Mathematics 2021-06-16 Sudesh K. Agrawal , John J. Hasenbein

Among various spatio-temporal prediction tasks, epidemic forecasting plays a critical role in public health management. Recent studies have demonstrated the strong potential of spatio-temporal graph neural networks (STGNNs) in extracting…

Machine Learning · Computer Science 2025-12-30 Yufan Zheng , Wei Jiang , Tong Chen , Alexander Zhou , Nguyen Quoc Viet Hung , Choujun Zhan , Hongzhi Yin

Several theoretical methods have been developed to approximate prevalence and threshold of epidemics on networks. Among them, the recurrent dynamic message-passing (rDMP) theory offers a state-of-the-art performance by preventing the echo…

Physics and Society · Physics 2023-11-14 Fei Gao , Jing Liu , Yaqian Zhao

Community is a common characteristic of networks including social networks, biological networks, computer and information networks, to name a few. Community detection is a basic step for exploring and analysing these network data.…

Machine Learning · Computer Science 2020-04-07 Maoying Qiao , Jun Yu , Wei Bian , Dacheng Tao

Following the success of deep convolutional networks in various vision and speech related tasks, researchers have started investigating generalizations of the well-known technique for graph-structured data. A recently-proposed method called…

Social and Information Networks · Computer Science 2018-09-21 John Boaz Lee , Ryan A. Rossi , Xiangnan Kong , Sungchul Kim , Eunyee Koh , Anup Rao

We study the problem of identifying the source of emerging large-scale outbreaks of foodborne disease. To solve the source identification problem we formulate a probabilistic model of the contamination diffusion process as a random walk on…

Physics and Society · Physics 2018-05-09 Abigail L. Horn , Hanno Friedrich

Identifying the source of epidemic-like spread in networks is crucial for removing internet viruses or finding the source of rumors in online social networks. The challenge lies in tracing the source from a snapshot observation of infected…

Social and Information Networks · Computer Science 2024-10-10 Pei-Duo Yu , Chee Wei Tan

Nowadays it is not uncommon to have to deal with dissemination on multi-layered networks and often finding the source of said propagation can be a crucial task. In this paper we tackle this exact problem with a maximum likelihood approach…

Social and Information Networks · Computer Science 2020-12-04 Robert Paluch , Łukasz G. Gajewski , K. Suchecki , Janusz A. Hołyst

Mathematical modeling of disease outbreaks can infer the future trajectory of an epidemic, which can inform policy decisions. Another task is inferring the origin of a disease, which is relatively difficult with current mathematical models.…

Physics and Society · Physics 2022-08-31 Mehrad Ansari , David Soriano-Paños , Gourab Ghoshal , Andrew D. White

Community describes the functional mechanism of a network, making community detection serve as a fundamental graph tool for various real applications like discovery of social circle. To date, a Symmetric and Non-negative Matrix…

Social and Information Networks · Computer Science 2022-03-09 Zhigang Liu , Xin Luo

We proposed the molecular hyper-message passing network (MolHMPN) that predicts the properties of a molecule with prior knowledge-guided subgraph. Modeling higher-order connectivities in molecules is necessary as changes in both the…

Computational Engineering, Finance, and Science · Computer Science 2022-01-05 Fangying Chen , Junyoung Park , Jinkyoo Park

Hypergraphs, describing networks where interactions take place among any number of units, are a natural tool to model many real-world social and biological systems. In this work we propose a principled framework to model the organization of…

Social and Information Networks · Computer Science 2023-10-25 Nicolò Ruggeri , Martina Contisciani , Federico Battiston , Caterina De Bacco

We propose Dynamically Pruned Message Passing Networks (DPMPN) for large-scale knowledge graph reasoning. In contrast to existing models, embedding-based or path-based, we learn an input-dependent subgraph to explicitly model reasoning…

Artificial Intelligence · Computer Science 2020-04-09 Xiaoran Xu , Wei Feng , Yunsheng Jiang , Xiaohui Xie , Zhiqing Sun , Zhi-Hong Deng

Locating the source of an epidemic, or patient zero (P0), can provide critical insights into the infection's transmission course and allow efficient resource allocation. Existing methods use graph-theoretic centrality measures and expensive…

Social and Information Networks · Computer Science 2020-06-30 Chintan Shah , Nima Dehmamy , Nicola Perra , Matteo Chinazzi , Albert-László Barabási , Alessandro Vespignani , Rose Yu

Label imbalance and homophily-heterophily mixture are the fundamental problems encountered when applying Graph Neural Networks (GNNs) to Graph Fraud Detection (GFD) tasks. Existing GNN-based GFD models are designed to augment graph…

Artificial Intelligence · Computer Science 2024-12-03 Wei Zhuo , Zemin Liu , Bryan Hooi , Bingsheng He , Guang Tan , Rizal Fathony , Jia Chen

The source detection problem arises when an epidemic process unfolds over a contact network, and the objective is to identify its point of origin, i.e., the source node. Research on this problem began with the seminal work of Shah and Zaman…

Social and Information Networks · Computer Science 2026-05-28 Martin Sterchi , Nathan Brack , Lorenz Hilfiker

Message passing neural networks (MPNNs) have emerged as go-to models for learning on graph-structured data in the past decade. Despite their effectiveness, most of such models still incur severe issues such as over-smoothing and…

Machine Learning · Computer Science 2025-11-26 Haoran Zheng , Renchi Yang , Yubo Zhou , Jianliang Xu

Message passing is a fundamental procedure for graph neural networks in the field of graph representation learning. Based on the homophily assumption, the current message passing always aggregates features of connected nodes, such as the…

Machine Learning · Computer Science 2022-02-02 Jie Chen , Weiqi Liu , Jian Pu

Graph Neural Networks (GNNs) have demonstrated strong performance in graph mining tasks due to their message-passing mechanism, which is aligned with the homophily assumption that adjacent nodes exhibit similar behaviors. However, in many…

Machine Learning · Computer Science 2024-05-29 Zhuonan Zheng , Yuanchen Bei , Sheng Zhou , Yao Ma , Ming Gu , HongJia XU , Chengyu Lai , Jiawei Chen , Jiajun Bu

Hypergraphs model higher-order relations that drive real-world decisions, from drug prescriptions to recommendations. A central structural signal in such data, beyond what pairwise relations can express, is interaction compositionality:…

Machine Learning · Computer Science 2026-05-19 Kyrie Zhao , Zehong Wang , Tianyi Ma , Fang Wu , Xiangru Tang , Pietro Lio , Sheng Wang , Yanfang Ye