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Cells self-organize into functional, ordered structures during tissue morphogenesis, a process that is evocative of colloidal self-assembly into engineered soft materials. Understanding how inter-cellular mechanical interactions may drive…

In this paper, we first endow the space of decorated planar rooted forests with a coproduct that equips it with the structure of a bialgebra and further a Moerdijk Hopf algebra. We also present a combinatorial description of this coproduct,…

Rings and Algebras · Mathematics 2025-08-27 Loic Foissy , Xiao-Song Peng , Yunzhou Xie , Yi Zhang

Artificial intelligence research to a great degree focuses on the brain and behaviors that the brain generates. But the brain, an extremely complex structure resulting from millions of years of evolution, can be viewed as a solution to…

Neurons and Cognition · Quantitative Biology 2017-03-07 Thomas E. Portegys

The modular decomposition of a symmetric map $\delta\colon X\times X \to \Upsilon$ (or, equivalently, a set of symmetric binary relations, a 2-structure, or an edge-colored undirected graph) is a natural construction to capture key features…

Combinatorics · Mathematics 2021-03-12 Carmen Bruckmann , Peter F. Stadler , Marc Hellmuth

Any permutation in the finite symmetric group can be written as a product of simple transpositions $s_i = (i~i+1)$. For a fixed permutation $\sigma \in \mathfrak{S}_n$ the products of minimal length are called reduced decompositions or…

Combinatorics · Mathematics 2023-11-28 Jennifer Elder

Geometric morphisms between realizability toposes are studied in terms of morphisms between partial combinatory algebras (pcas). The morphisms inducing geometric morphisms (the {\em computationally dense\/} ones) are seen to be the ones…

Logic · Mathematics 2014-08-19 Eric Faber , Jaap van Oosten

Generating mathematical equations from natural language requires an accurate understanding of the relations among math expressions. Existing approaches can be broadly categorized into token-level and expression-level generation. The former…

Computation and Language · Computer Science 2023-10-19 Wenqi Zhang , Yongliang Shen , Qingpeng Nong , Zeqi Tan , Yanna Ma , Weiming Lu

We describe a basic correspondence between linear algebraic structures within vector embeddings in artificial neural networks and conditional independence constraints on the probability distributions modeled by these networks. Our framework…

Machine Learning · Computer Science 2024-07-15 Matthew Trager , Alessandro Achille , Pramuditha Perera , Luca Zancato , Stefano Soatto

Algebraic effects offer a versatile framework that covers a wide variety of effects. However, the family of operations that delimit scopes are not algebraic and are usually modelled as handlers, thus preventing them from being used freely…

Programming Languages · Computer Science 2022-01-26 Zhixuan Yang , Marco Paviotti , Nicolas Wu , Birthe van den Berg , Tom Schrijvers

Motivated by applications in moduli theory, we introduce a flexible and powerful language for expressing lower bounds on relative dimension of morphisms of schemes, and more generally of algebraic stacks. We show that the theory is robust…

Algebraic Geometry · Mathematics 2013-05-29 Brian Osserman

Phrase structure trees have a hierarchical structure. In many subjects, most notably in Taxonomy such tree structures have been studied using ultrametrics. Here syntactical hierarchical phrase trees are subject to a similar analysis, which…

Computation and Language · Computer Science 2015-12-04 Mark D. Roberts

Operads are algebraic devices offering a formalization of the concept of operations with several inputs and one output. Such operations can be naturally composed to form bigger and more complex ones. Coming historically from algebraic…

Combinatorics · Mathematics 2021-04-27 Samuele Giraudo

The applicability of computational and dynamical systems models to organisms is scrutinized, using examples from developmental biology and cognition. Developmental morphogenesis is dependent on the inherent material properties of developing…

Neurons and Cognition · Quantitative Biology 2023-10-24 Stuart A. Newman

When trained on language data, do transformers learn some arbitrary computation that utilizes the full capacity of the architecture or do they learn a simpler, tree-like computation, hypothesized to underlie compositional meaning systems…

Computation and Language · Computer Science 2022-11-07 Shikhar Murty , Pratyusha Sharma , Jacob Andreas , Christopher D. Manning

We introduce a framework for constructing fractal trees via analytic generator fields, replacing discrete affine transformations and symbolic rewriting rules by the integration of smooth vector fields in an internal state space. In this…

Dynamical Systems · Mathematics 2026-02-04 Henk Mulder

In this paper we show that an account for coordination can be constructed using the derivation structures in a lexicalized Tree Adjoining Grammar (LTAG). We present a notion of derivation in LTAGs that preserves the notion of fixed…

cmp-lg · Computer Science 2008-02-03 Anoop Sarkar , Aravind Joshi

Graph-based semantic representations are valuable in natural language processing, where it is often simple and effective to represent linguistic concepts as nodes, and relations as edges between them. Several attempts has been made to find…

Formal Languages and Automata Theory · Computer Science 2021-05-10 Johanna Björklund , Frank Drewes , Anna Jonsson

Let M be a bicomplete, closed symmetric monoidal category. Let P be an operad in M, i.e., a monoid in the category of symmetric sequences of objects in M, with its composition monoidal structure. Let R be a P-co-ring, i.e., a comonoid in…

Algebraic Topology · Mathematics 2007-05-23 Kathryn Hess , Paul-Eugene Parent , Jonathan Scott

The classical subset construction for non-deterministic automata can be generalized to other side-effects captured by a monad. The key insight is that both the state space of the determinized automaton and its semantics---languages over an…

Formal Languages and Automata Theory · Computer Science 2019-05-16 Gerco van Heerdt , Joshua Moerman , Matteo Sammartino , Alexandra Silva

A longstanding question in cognitive science concerns the learning mechanisms underlying compositionality in human cognition. Humans can infer the structured relationships (e.g., grammatical rules) implicit in their sensory observations…

Machine Learning · Computer Science 2021-05-20 Jacob Russin , Roland Fernandez , Hamid Palangi , Eric Rosen , Nebojsa Jojic , Paul Smolensky , Jianfeng Gao