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For many real-world optimization problems it is possible to perform partial evaluations, meaning that the impact of changing a few variables on a solution's fitness can be computed very efficiently. It has been shown that such partial…

Neural and Evolutionary Computing · Computer Science 2024-02-19 Georgios Andreadis , Tanja Alderliesten , Peter A. N. Bosman

When it comes to solving optimization problems with evolutionary algorithms (EAs) in a reliable and scalable manner, detecting and exploiting linkage information, i.e., dependencies between variables, can be key. In this article, we present…

Neural and Evolutionary Computing · Computer Science 2021-09-14 Arkadiy Dushatskiy , Marco Virgolin , Anton Bouter , Dirk Thierens , Peter A. N. Bosman

Exploiting knowledge about the structure of a problem can greatly benefit the efficiency and scalability of an Evolutionary Algorithm (EA). Model-Based EAs (MBEAs) are capable of doing this by explicitly modeling the problem structure. The…

Neural and Evolutionary Computing · Computer Science 2023-05-11 Anton Bouter , Peter A. N. Bosman

The Gene-pool Optimal Mixing Evolutionary Algorithm (GOMEA) is a model-based EA framework that has been shown to perform well in several domains, including Genetic Programming (GP). Differently from traditional EAs where variation acts…

Neural and Evolutionary Computing · Computer Science 2021-03-08 Marco Virgolin , Tanja Alderliesten , Cees Witteveen , Peter A. N. Bosman

In a Gray-Box Optimization (GBO) setting that allows for partial evaluations, the fitness of an individual can be updated efficiently after a subset of its variables has been modified. This enables more efficient evolutionary optimization…

Neural and Evolutionary Computing · Computer Science 2022-03-17 Anton Bouter , Peter A. N. Bosman

Bayesian networks model relationships between random variables under uncertainty and can be used to predict the likelihood of events and outcomes while incorporating observed evidence. From an eXplainable AI (XAI) perspective, such models…

Machine Learning · Computer Science 2024-02-20 Damy M. F. Ha , Tanja Alderliesten , Peter A. N. Bosman

Model-Based Evolutionary Algorithms (MBEAs) can be highly scalable by virtue of linkage (or variable interaction) learning. This requires, however, that the linkage model can capture the exploitable structure of a problem. Usually, a single…

Neural and Evolutionary Computing · Computer Science 2022-03-14 Arthur Guijt , Dirk Thierens , Tanja Alderliesten , Peter A. N. Bosman

Estimation of distribution algorithms (EDA) are stochastic optimization algorithms. EDA establishes a probability model to describe the distribution of solution from the perspective of population macroscopically by statistical learning…

Neural and Evolutionary Computing · Computer Science 2020-03-19 Zhenyu Liang , Yunfan Li , Zhongwei Wan

Currently, the genetic programming version of the gene-pool optimal mixing evolutionary algorithm (GP-GOMEA) is among the top-performing algorithms for symbolic regression (SR). A key strength of GP-GOMEA is its way of performing variation,…

Neural and Evolutionary Computing · Computer Science 2022-04-27 Marco Virgolin , Peter A. N. Bosman

Optimal Mixing (OM) is a variation operator that integrates local search with genetic recombination. EAs with OM are capable of state-of-the-art optimization in discrete spaces, offering significant advantages over classic…

Neural and Evolutionary Computing · Computer Science 2025-06-19 Anton Bouter , Dirk Thierens , Peter A. N. Bosman

Estimation of Distribution Algorithms (EDAs) require flexible probability models that can be efficiently learned and sampled. Restricted Boltzmann Machines (RBMs) are generative neural networks with these desired properties. We integrate an…

Neural and Evolutionary Computing · Computer Science 2014-12-01 Malte Probst , Franz Rothlauf , Jörn Grahl

We introduce an order-invariant reinforcement learning framework for black-box combinatorial optimization. Classical estimation-of-distribution algorithms (EDAs) often rely on learning explicit variable dependency graphs, which can be…

Machine Learning · Computer Science 2026-01-30 Olivier Goudet , Quentin Suire , Adrien Goëffon , Frédéric Saubion , Sylvain Lamprier

We propose a novel surrogate-assisted Evolutionary Algorithm for solving expensive combinatorial optimization problems. We integrate a surrogate model, which is used for fitness value estimation, into a state-of-the-art P3-like variant of…

Neural and Evolutionary Computing · Computer Science 2021-04-19 Arkadiy Dushatskiy , Tanja Alderliesten , Peter A. N. Bosman

The Gene-pool Optimal Mixing Evolutionary Algorithm (GOMEA) is a state of the art evolutionary algorithm that leverages linkage learning to efficiently exploit problem structure. By identifying and preserving important building blocks…

Neural and Evolutionary Computing · Computer Science 2024-07-12 Yukai Qiao , Marcus Gallagher

Conformational sampling of biomolecules using molecular dynamics simulations often produces large amount of high dimensional data that makes it difficult to interpret using conventional analysis techniques. Dimensionality reduction methods…

Biomolecules · Quantitative Biology 2021-12-08 Mahdi Ghorbani , Samarjeet Prasad , Jeffery B. Klauda , Bernard R. Brooks

In Symbolic Regression (SR), achieving a proper balance between accuracy and interpretability remains a key challenge. The Genetic Programming variant of the Gene-pool Optimal Mixing Evolutionary Algorithm (GP-GOMEA) is of particular…

Neural and Evolutionary Computing · Computer Science 2025-07-08 Joe Harrison , Tanja Alderliesten. Peter A. N. Bosman

GP-GOMEA is among the state-of-the-art for symbolic regression, especially when it comes to finding small and potentially interpretable solutions. A key mechanism employed in any GOMEA variant is the exploitation of linkage, the…

Neural and Evolutionary Computing · Computer Science 2026-02-03 Johannes Koch , Tanja Alderliesten , Peter A. N. Bosman

Generative data augmentation, which scales datasets by obtaining fake labeled examples from a trained conditional generative model, boosts classification performance in various learning tasks including (semi-)supervised learning, few-shot…

Machine Learning · Computer Science 2023-05-30 Chenyu Zheng , Guoqiang Wu , Chongxuan Li

Sparse Mixture of Experts (SMoE) enables scalable parameter growth in large language models (LLMs) by selectively activating a subset of experts, and its large parameter count necessitates distributed deployment for inference. However,…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-05-07 Yu Han , Lehan Pan , Jie Peng , Ziyang Tao , Hanqi Zhu , Wuyang Zhang , Yanyong Zhang

Estimation of Distribution Algorithms (EDAs) require flexible probability models that can be efficiently learned and sampled. Autoencoders (AE) are generative stochastic networks with these desired properties. We integrate a special type of…

Neural and Evolutionary Computing · Computer Science 2015-09-22 Malte Probst
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