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The overexpression of human epidermal growth factor receptor 2 (HER2) has been established as a therapeutic target in multiple types of cancers, such as breast and gastric cancers. Immunohistochemistry (IHC) is employed as a basic HER2 test…

Image and Video Processing · Electrical Eng. & Systems 2020-09-16 Jun Zhang , Kuan Tian , Pei Dong , Haocheng Shen , Kezhou Yan , Jianhua Yao , Junzhou Huang , Xiao Han

Sensitivity to staining variation remains a major barrier to deploying computational pathology (CPath) models as hematoxylin and eosin (H&E) staining varies across laboratories, requiring systematic assessment of how this variability…

Computer Vision and Pattern Recognition · Computer Science 2026-03-16 Lydia A. Schönpflug , Nikki van den Berg , Sonali Andani , Nanda Horeweg , Jurriaan Barkey Wolf , Tjalling Bosse , Viktor H. Koelzer , Maxime W. Lafarge

Rheumatoid Arthritis (RA) is a chronic, autoimmune disease which primarily affects the joint's synovial tissue. It is a highly heterogeneous disease, with wide cellular and molecular variability observed in synovial tissues. Over the last…

Image and Video Processing · Electrical Eng. & Systems 2023-09-15 Amaya Gallagher-Syed , Abbas Khan , Felice Rivellese , Costantino Pitzalis , Myles J. Lewis , Gregory Slabaugh , Michael R. Barnes

Diffusion probabilistic models learn to remove noise added during training, generating novel data (e.g., images) from Gaussian noise through sequential denoising. However, conditioning the generative process on corrupted or masked images is…

Computer Vision and Pattern Recognition · Computer Science 2026-05-01 Sakshi Agarwal , Gabriel Hope , Jimin Heo , Erik B. Sudderth

Hyperspectral image (HSI) restoration aims at recovering clean images from degraded observations and plays a vital role in downstream tasks. Existing model-based methods have limitations in accurately modeling the complex image…

Computer Vision and Pattern Recognition · Computer Science 2024-02-27 Li Pang , Xiangyu Rui , Long Cui , Hongzhong Wang , Deyu Meng , Xiangyong Cao

Due to its superior efficiency in utilizing annotations and addressing gigapixel-sized images, multiple instance learning (MIL) has shown great promise as a framework for whole slide image (WSI) classification in digital pathology…

Quantitative Methods · Quantitative Biology 2023-07-14 Qiehe Sun , Jiawen Li , Jin Xu , Junru Cheng , Tian Guan , Yonghong He

Immunofluorescent (IF) imaging is crucial for visualizing biomarker expressions, cell morphology and assessing the effects of drug treatments on sub-cellular components. IF imaging needs extra staining process and often requiring cell…

Joint reconstruction of human-object interaction marks a significant milestone in comprehending the intricate interrelations between humans and their surrounding environment. Nevertheless, previous optimization methods often struggle to…

Computer Vision and Pattern Recognition · Computer Science 2025-09-10 Ao Li , Jinpeng Liu , Yixuan Zhu , Yansong Tang

Accurate channel state information (CSI) is essential for reliable multiuser MIMO operation. In 5G NR, reciprocity-based beamforming via uplink Sounding Reference Signals (SRS) face resource and coverage constraints, motivating sparse…

Signal Processing · Electrical Eng. & Systems 2025-10-31 Usman Akram , Fan Zhang , Yang Li , Haris Vikalo

We address hyperspectral image (HSI) synthesis, a problem that has garnered growing interest yet remains constrained by the conditional generative paradigms that limit sample diversity. While diffusion models have emerged as a…

Computer Vision and Pattern Recognition · Computer Science 2025-08-20 Shiyu Shen , Bin Pan , Ziye Zhang , Zhenwei Shi

Staining reveals the micro structure of the aspirate while creating histopathology slides. Stain variation, defined as a chromatic difference between the source and the target, is caused by varying characteristics during staining, resulting…

Image and Video Processing · Electrical Eng. & Systems 2022-08-31 Nilanjan Chattopadhyay , Shiv Gehlot , Nitin Singhal

High-resolution spatial transcriptomics (HR-ST) technologies offer unprecedented insights into tissue architecture but lack standardized frameworks for histological annotation. We present ST2HE, a cross-platform generative framework that…

Quantitative Methods · Quantitative Biology 2025-10-16 Zhentao Liu , Arun Das , Wen Meng , Yu-Chiao Chiu , Shou-Jiang Gao , Yufei Huang

Progress in digital pathology is hindered by high-resolution images and the prohibitive cost of exhaustive localized annotations. The commonly used paradigm to categorize pathology images is patch-based processing, which often incorporates…

Computer Vision and Pattern Recognition · Computer Science 2022-07-19 Thomas Stegmüller , Behzad Bozorgtabar , Antoine Spahr , Jean-Philippe Thiran

Skin lesion classification datasets often suffer from severe class imbalance, with malignant cases significantly underrepresented, leading to biased decision boundaries during deep learning training. We address this challenge using…

Computer Vision and Pattern Recognition · Computer Science 2026-02-24 Francisco Filho , Kelvin Cunha , Fábio Papais , Emanoel dos Santos , Rodrigo Mota , Thales Bezerra , Erico Medeiros , Paulo Borba , Tsang Ing Ren

Accurate whole-cell and nuclear segmentation is essential for precision pathology and spatial omics, yet routine hematoxylin and eosin (H&E) staining provides limited cytoplasmic contrast, restricting analyses to nuclei. Multiplex…

Computer Vision and Pattern Recognition · Computer Science 2026-04-28 Yasin Shokrollahi , Karina B. Pinao Gonzales , Elizve N. Barrientos Toro , Paul Acosta , Patient Mosaic Team , Pingjun Chen , Yinyin Yuan , Xiaoxi Pan

Poor performance of quantitative analysis in histopathological Whole Slide Images (WSI) has been a significant obstacle in clinical practice. Annotating large-scale WSIs manually is a demanding and time-consuming task, unlikely to yield the…

Computer Vision and Pattern Recognition · Computer Science 2023-08-08 Sarah Cechnicka , James Ball , Hadrien Reynaud , Callum Arthurs , Candice Roufosse , Bernhard Kainz

Pseudo-healthy image inpainting is an essential preprocessing step for analyzing pathological brain MRI scans. Most current inpainting methods favor slice-wise 2D models for their high in-plane fidelity, but their independence across slices…

Image and Video Processing · Electrical Eng. & Systems 2025-07-25 Dou Hoon Kwark , Shirui Luo , Xiyue Zhu , Yudu Li , Zhi-Pei Liang , Volodymyr Kindratenko

Score-based diffusion models learn to reverse a stochastic differential equation that maps data to noise. However, for complex tasks, numerical error can compound and result in highly unnatural samples. Previous work mitigates this drift…

Machine Learning · Statistics 2023-06-12 Aaron Lou , Stefano Ermon

Data augmentation effectively addresses the imbalanced-small sample data (ISSD) problem in hyperspectral image classification (HSIC). While most methodologies extend features in the latent space, few leverage text-driven generation to…

Computer Vision and Pattern Recognition · Computer Science 2025-12-30 Yimin Zhu , Lincoln Linlin Xu

Image-based head swapping task aims to stitch a source head to another source body flawlessly. This seldom-studied task faces two major challenges: 1) Preserving the head and body from various sources while generating a seamless transition…

Computer Vision and Pattern Recognition · Computer Science 2023-08-04 Qinghe Wang , Lijie Liu , Miao Hua , Pengfei Zhu , Wangmeng Zuo , Qinghua Hu , Huchuan Lu , Bing Cao