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Polymer topology, which plays a principal role in the rheology of polymeric fluids, and non-equilibrium materials, which exhibit time-varying rheological properties, are topics of intense investigation. Here, we push composites of circular…

Soft Condensed Matter · Physics 2023-05-23 Juexin Marfai , Ryan J. McGorty , Rae M. Robertson-Anderson

Topological mechanics can realize soft modes in mechanical metamaterials in which the number of degrees of freedom for particle motion is finely balanced by the constraints provided by interparticle interactions. However, solid objects are…

Soft Condensed Matter · Physics 2021-03-03 Hridesh Kedia , Anton Souslov , D. Zeb Rocklin

Unconcatenated, unknotted polymer rings in the melt are subject to strong interactions with neighboring chains due to the presence of topological constraints. We study this by computer simulation using the bond-fluctuation algorithm for…

Statistical Mechanics · Physics 2009-10-31 M. Mueller , J. P. Wittmer , M. E. Cates

Biopolymer looping is a dynamic process that occurs ubiquitously in cells for gene regulation, protein folding, etc. In cellular environments, biopolymers are often subject to tensions which are either static, or temporally fluctuating far…

Soft Condensed Matter · Physics 2012-02-07 Jaeoh Shin , Wokyung Sung

During the life cycle of bacterial cells the non-mixing of the two ring-shaped daughter genomes is an important prerequisite for the cell division process. Mimicking the environments inside highly crowded biological cells, we study the…

Soft Condensed Matter · Physics 2014-12-24 Jaeoh Shin , Andrey G Cherstvy , Ralf Metzler

We use Brownian dynamics simulations and advanced topological profiling methods to characterize the out-of-equilibrium evolution of self-entanglement in linear polymers confined into nano-channels and under periodic compression. We…

Soft Condensed Matter · Physics 2020-06-22 Davide Michieletto , Enzo Orlandini , Matthew S Turner , Cristian Micheletti

The bond fluctuation method is used to simulate both non-concatenated entangled and interpenetrating melts of ring polymers. We find that the swelling of interpenetrating rings upon dilution follows the same laws as for linear chains.…

Soft Condensed Matter · Physics 2021-04-13 Michael Lang , Jakob Fischer , Jens-Uwe Sommer

Entangled knots form spontaneously in flexible filaments, yet the influence of the surrounding environment on this process is poorly understood. Here we demonstrate that free-moving particles act as kinetic catalysts for spontaneous…

Soft Condensed Matter · Physics 2026-01-01 Peimo Sun , Yuhan Qin , Zheng Li

Reduction of information entropy along with ever-increasing complexity are among the key signatures of living matter. Understanding the onset of such behavior in early prebiotic world is essential for solving the problem of origins of life.…

Populations and Evolution · Quantitative Biology 2018-10-17 Alexei V. Tkachenko , Sergei Maslov

At the heart of systems chemistry lies the idea that supramolecular interactions can give rise to complex and unexpected collective states that emerge on a fundamentally different lengthscale to that of the interactions themselves. While in…

Precise control over the flow behavior of liquids is a critical problem and is demanding for multifaceted applications. Introducing surface-engineered nanoparticles into the liquid can tune the flow behavior. However, the extent of…

Materials Science · Physics 2025-03-10 Prama Adhya , Sachin M. B. Gautham , Tarak K Patra , Manish Kaushal , Titash Mondal

The torsional elasticity of semiflexible polymers like DNA is of biological significance. A mathematical treatment of this problem was begun by Fuller using the relation between link, twist and writhe, but progress has been hindered by the…

Soft Condensed Matter · Physics 2015-05-20 Joseph Samuel , Supurna Sinha

We consider the folding of a self-avoiding homopolymer on a lattice, with saturating hydrogen bond interactions. Our goal is to numerically evaluate the statistical distribution of the topological genus of pseudoknotted configurations. The…

Biomolecules · Quantitative Biology 2009-11-11 G. Vernizzi , P. Ribeca , H. Orland , A. Zee

Plasmonic excitations behave fundamentally different in layered materials in comparison to bulk systems. They form gapless modes, which in turn couple at low energies to the electrons. Thereby they can strongly influence superconducting…

Superconductivity · Physics 2018-03-14 M. Rösner , R. E. Groenewald , G. Schönhoff , J. Berges , S. Haas , T. O. Wehling

Twisted and coiled polymer actuators (TCPAs) generate large contractile mechanical work mimicking natural muscles, which makes them suitable for robotics and health-assistive devices. Understanding the mechanism of nylon TCPA remains…

Applied Physics · Physics 2024-10-03 Qiong Wang , Anan Ghrayeb , SeongHyeon Kim , Liuyang Cheng , Sameh Tawfick

We study the segregation of motile semiflexible filaments from a background of similar but non-motile filaments. Our Langevin dynamics simulations reveal a wide range of emergent structures governed by filament flexibility and activity,…

Soft Condensed Matter · Physics 2025-12-22 Chitrak Bhowmik , Aparna Baskaran , Sriram Ramaswamy

Free surfaces in glassy polymer films are known to induce surface mobile layers with enhanced dynamics. Using molecular dynamics simulations of a bead-spring model, we study a wide variety of layer-resolved structural and dynamical…

Soft Condensed Matter · Physics 2018-11-14 Chi-Hang Lam

Semiflexible polymers form central structures in biological material. Modeling approaches usually neglect influences of polymer-specific molecular features aiming to describe semiflexible polymers universally. Here, we investigate the…

Colloids dispersed in nematic liquid crystals form topological composites in which colloid-associated defects mediate interactions while adhering to fundamental topological constraints. Better realising the promise of such materials…

Soft Condensed Matter · Physics 2024-04-16 Louise C. Head , Yair A. G. Fosado , Davide Marenduzzo , Tyler N. Shendruk

Semiflexible polymers are ubiquitous in natural and artificial systems, where their intermediate rigidity gives rise to rich structural and dynamical behavior. Confinement plays a central role in these behaviors, as spatial restrictions can…

Soft Condensed Matter · Physics 2026-03-31 Nasir Amiri , Jonathan P. Singer , Xin Yong
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