Related papers: On Finding $\ell$-th Smallest Perfect Matchings
Since 1997 there has been a steady stream of advances for the maximum disjoint paths problem. Achieving tractable results has usually required focusing on relaxations such as: (i) to allow some bounded edge congestion in solutions, (ii) to…
Mining groups of genes that consistently co-express is an important problem in biomedical research, where it is critical for applications such as drug-repositioning and designing new disease treatments. Recently, Cooley et al. modeled this…
We consider sequences of finite weighted random graphs that converge locally to unimodular i.i.d. weighted random trees. When the weights are atomless, we prove that the matchings of maximal weight converge locally to a matching on the…
Many problems are NP-hard and, unless P = NP, do not admit polynomial-time exact algorithms. The fastest known exact algorithms exactly usually take time exponential in the input size. Much research effort has gone into obtaining faster…
Let G=(V,E) be a graph with f:V\to Z_+ a function assigning degree bounds to vertices. We present the first efficient algebraic algorithm to find an f-factor. The time is \tilde{O}(f(V)^{\omega}). More generally for graphs with integral…
In the Single Source Replacement Paths (SSRP) problem we are given a graph $G = (V, E)$, and a shortest paths tree $\widehat{K}$ rooted at a node $s$, and the goal is to output for every node $t \in V$ and for every edge $e$ in…
We present a fully dynamic algorithm for maintaining approximate maximum weight matching in general weighted graphs. The algorithm maintains a matching ${\cal M}$ whose weight is at least $1/8 M^{*}$ where $M^{*}$ is the weight of the…
We consider three variants of the problem of finding a maximum weight restricted $2$-matching in a subcubic graph $G$. (A $2$-matching is any subset of the edges such that each vertex is incident to at most two of its edges.) Depending on…
Considering the worst-case scenario, junction tree algorithm remains the most general solution for exact MAP inference with polynomial run-time guarantees. Unfortunately, its main tractability assumption requires the treewidth of a…
We study the Equitable Connected Partition (ECP for short) problem, where we are given a graph G=(V,E) together with an integer p, and our goal is to find a partition of V into p parts such that each part induces a connected sub-graph of G…
In this paper, we present a new exact algorithm for counting perfect matchings, which relies on neither inclusion-exclusion principle nor tree-decompositions. For any bipartite graph of $2n$ nodes and $\Delta n$ edges such that $\Delta \geq…
Consider the setting of \emph{randomly weighted graphs}, namely, graphs whose edge weights are chosen independently according to probability distributions with finite support over the non-negative reals. Under this setting, properties of…
A \emph{2-matching} in an undirected graph $G = (VG, EG)$ is a function $f \colon EG \to \set{0,1,2}$ such that for each node $v \in VG$ the sum of values $f(e)$ on all edges $e$ incident to $v$ does not exceed~2. The \emph{size} of $f$ is…
We study pattern matching problems on two major representations of uncertain sequences used in molecular biology: weighted sequences (also known as position weight matrices, PWM) and profiles (i.e., scoring matrices). In the simple version,…
Finding large or heavy matchings in graphs is a ubiquitous combinatorial optimization problem. In this paper, we engineer the first non-trivial implementations for approximating the dynamic weighted matching problem. Our first algorithm is…
Let $G$ be an undirected graph. An edge of $G$ dominates itself and all edges adjacent to it. A subset $E'$ of edges of $G$ is an edge dominating set of $G$, if every edge of the graph is dominated by some edge of $E'$. We say that $E'$ is…
We propose improved exact and heuristic algorithms for solving the maximum weight clique problem, a well-known problem in graph theory with many applications. Our algorithms interleave successful techniques from related work with novel data…
An efficient dominating set (or perfect code) in a graph is a set of vertices the closed neighborhoods of which partition the vertex set of the graph. The minimum weight efficient domination problem is the problem of finding an efficient…
Given an undirected graph $G = (V, E)$ and a weight function $w:E \to \mathbb{R}$, the \textsc{Minimum Dominating Tree} problem asks to find a minimum weight sub-tree of $G$, $T = (U, F)$, such that every $v \in V \setminus U$ is adjacent…
The (Perfect) Matching Cut problem is to decide if a graph $G$ has a (perfect) matching cut, i.e., a (perfect) matching that is also an edge cut of $G$. Both Matching Cut and Perfect Matching Cut are known to be NP-complete. A perfect…