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Spiking Neural Networks (SNNs) are promising bio-inspired third-generation neural networks. Recent research has trained deep SNN models with accuracy on par with Artificial Neural Networks (ANNs). Although the event-driven and sparse nature…

Neural and Evolutionary Computing · Computer Science 2026-01-30 Sherif Eissa , Sander Stuijk , Floran De Putter , Andrea Nardi-Dei , Federico Corradi , Henk Corporaal

Proteins perform much of the work in living organisms, and consequently the development of efficient computational methods for protein representation is essential for advancing large-scale biological research. Most current approaches…

Quantitative Methods · Quantitative Biology 2023-06-09 Francesco Ceccarelli , Lorenzo Giusti , Sean B. Holden , Pietro Liò

Dense embedding models are commonly deployed in commercial search engines, wherein all the document vectors are pre-computed, and near-neighbor search (NNS) is performed with the query vector to find relevant documents. However, the…

Machine Learning · Computer Science 2020-09-01 Tharun Medini , Beidi Chen , Anshumali Shrivastava

A recent series of papers by Andoni, Naor, Nikolov, Razenshteyn, and Waingarten (STOC 2018, FOCS 2018) has given approximate near neighbour search (NNS) data structures for a wide class of distance metrics, including all norms. In…

Data Structures and Algorithms · Computer Science 2021-05-12 Deepanshu Kush , Aleksandar Nikolov , Haohua Tang

Direct numerical simulations (DNS) are accurate but computationally expensive for predicting materials evolution across timescales, due to the complexity of the underlying evolution equations, the nature of multiscale spatio-temporal…

Machine Learning · Computer Science 2023-12-12 Vivek Oommen , Khemraj Shukla , Saaketh Desai , Remi Dingreville , George Em Karniadakis

We present Unified PDE Solvers (UPS), a data- and compute-efficient approach to developing unified neural operators for diverse families of spatiotemporal PDEs from various domains, dimensions, and resolutions. UPS embeds different PDEs…

Machine Learning · Computer Science 2024-11-26 Junhong Shen , Tanya Marwah , Ameet Talwalkar

A core challenge in the interpretation of deep neural networks is identifying commonalities between the underlying algorithms implemented by distinct networks trained for the same task. Motivated by this problem, we introduce DYNAMO, an…

Machine Learning · Computer Science 2023-03-01 Jordan Cotler , Kai Sheng Tai , Felipe Hernández , Blake Elias , David Sussillo

Recently, the use of neural networks to accelerate the solving of partial differential equations (PDEs) has gained significant traction in both academia and industry. However, employing neural networks as standalone surrogate models raises…

t-distributed Stochastic Neighborhood Embedding (t-SNE) is a method for dimensionality reduction and visualization that has become widely popular in recent years. Efficient implementations of t-SNE are available, but they scale poorly to…

Machine Learning · Computer Science 2019-02-26 George C. Linderman , Manas Rachh , Jeremy G. Hoskins , Stefan Steinerberger , Yuval Kluger

Despite achieving tremendous success, existing deep learning models have exposed limitations in compositional generalization, the capability to learn compositional rules and apply them to unseen cases in a systematic manner. To tackle this…

Machine Learning · Computer Science 2020-10-23 Xinyun Chen , Chen Liang , Adams Wei Yu , Dawn Song , Denny Zhou

Zeroth-order local optimisation algorithms are essential for solving real-valued black-box optimisation problems. Among these, Natural Evolution Strategies (NES) represent a prominent class, particularly well-suited for scenarios where…

Machine Learning · Computer Science 2025-07-11 Pierre Osselin , Masaki Adachi , Xiaowen Dong , Michael A. Osborne

Non-autonomous differential equations are crucial for modeling systems influenced by external signals, yet fitting these models to data becomes particularly challenging when the signals change abruptly. To address this problem, we propose a…

Machine Learning · Computer Science 2025-07-10 Hyeontae Jo , Krešimir Josić , Jae Kyoung Kim

The widespread integration of embedded systems across various industries has facilitated seamless connectivity among devices and bolstered computational capabilities. Despite their extensive applications, embedded systems encounter…

Cryptography and Security · Computer Science 2024-04-16 Sreenitha Kasarapu , Sathwika Bavikadi , Sai Manoj Pudukotai Dinakarrao

The Nearest Neighbor Search (NNS) problem asks to design a data structure that preprocesses an $n$-point dataset $X$ lying in a metric space $\mathcal{M}$, so that given a query point $q \in \mathcal{M}$, one can quickly return a point of…

Data Structures and Algorithms · Computer Science 2026-03-24 Robert Krauthgamer , Nir Petruschka

Ensembles of neural networks achieve superior performance compared to stand-alone networks in terms of accuracy, uncertainty calibration and robustness to dataset shift. \emph{Deep ensembles}, a state-of-the-art method for uncertainty…

Machine Learning · Computer Science 2022-02-23 Sheheryar Zaidi , Arber Zela , Thomas Elsken , Chris Holmes , Frank Hutter , Yee Whye Teh

Stochastic Neighbor Embedding (SNE) is a manifold learning and dimensionality reduction method with a probabilistic approach. In SNE, every point is consider to be the neighbor of all other points with some probability and this probability…

Machine Learning · Statistics 2022-08-04 Benyamin Ghojogh , Ali Ghodsi , Fakhri Karray , Mark Crowley

Solving inverse problems is a fundamental component of science, engineering and mathematics. With the advent of deep learning, deep neural networks have significant potential to outperform existing state-of-the-art, model-based methods for…

Machine Learning · Computer Science 2022-12-22 Maksym Neyra-Nesterenko , Ben Adcock

A single solid tumor, composed of nearly identical cells, exhibits heterogeneous dynamics. Cells dynamics in the core is glass-like whereas those in the periphery undergo diffusive or super-diffusive behavior. Quantification of…

Biological Physics · Physics 2020-11-24 Sumit Sinha , D. Thirumalai

Deep neural networks (DNNs) have made significant strides in Natural Language Processing (NLP), yet their interpretability remains elusive, particularly when evaluating their intricate decision-making processes. Traditional methods often…

Computation and Language · Computer Science 2025-12-05 Zhou Yang , Shunyan Luo , Jiazhen Zhu , Fang Jin

Single-cell sequencing technologies reveal cellular heterogeneity at high resolution, advancing our understanding of biological complexity. As datasets start to scale to tens of millions of cells, computational workflows face substantial…