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Purpose: To develop and evaluate an end-to-end deep learning pipeline for segmentation and analysis of cardiac magnetic resonance images to provide core-lab processing for a multi-centre registry of Fontan patients. Materials and Methods:…

Despite the widespread availability of in-treatment room cone beam computed tomography (CBCT) imaging, due to the lack of reliable segmentation methods, CBCT is only used for gross set up corrections in lung radiotherapies. Accurate and…

Image and Video Processing · Electrical Eng. & Systems 2021-09-15 Jue Jiang , Sadegh Riyahi Alam , Ishita Chen , Perry Zhang , Andreas Rimner , Joseph O. Deasy , Harini Veeraraghavan

The purpose of this study is to develop an automated algorithm for thoracic vertebral segmentation on chest radiography using deep learning. 124 de-identified lateral chest radiographs on unique patients were obtained. Segmentations of…

Image and Video Processing · Electrical Eng. & Systems 2020-01-07 Sanket Badhe , Varun Singh , Joy Li , Paras Lakhani

Segmentation of lung tissue in computed tomography (CT) images is a precursor to most pulmonary image analysis applications. Semantic segmentation methods using deep learning have exhibited top-tier performance in recent years, however…

Image and Video Processing · Electrical Eng. & Systems 2023-04-27 Niloufar Delfan , Hamid Abrishami Moghaddam , Mohammadreza Modaresi , Kimia Afshari , Kasra Nezamabadi , Neda Pak , Omid Ghaemi , Mohamad Forouzanfar

Medical image classification and segmentation based on deep learning (DL) are emergency research topics for diagnosing variant viruses of the current COVID-19 situation. In COVID-19 computed tomography (CT) images of the lungs, ground glass…

Image and Video Processing · Electrical Eng. & Systems 2022-08-08 Shiyi Wang , Guang Yang

Recent advances in deep learning based image segmentation methods have enabled real-time performance with human-level accuracy. However, occasionally even the best method fails due to low image quality, artifacts or unexpected behaviour of…

This paper presents a review of deep learning (DL) in multi-organ segmentation. We summarized the latest DL-based methods for medical image segmentation and applications. These methods were classified into six categories according to their…

Image and Video Processing · Electrical Eng. & Systems 2020-01-30 Yang Lei , Yabo Fu , Tonghe Wang , Richard L. J. Qiu , Walter J. Curran , Tian Liu , Xiaofeng Yang

Three-dimensional (3D) semi-quantitative grading of pathological features in articular cartilage (AC) offers significant improvements in basic research of osteoarthritis (OA). We have earlier developed the 3D protocol for imaging of AC and…

Image and Video Processing · Electrical Eng. & Systems 2019-07-12 Aleksei Tiulpin , Mikko Finnilä , Petri Lehenkari , Heikki J. Nieminen , Simo Saarakkala

3D segmentation with deep learning if trained with full resolution is the ideal way of achieving the best accuracy. Unlike in 2D, 3D segmentation generally does not have sparse outliers, prevents leakage to surrounding soft tissues, at the…

Image and Video Processing · Electrical Eng. & Systems 2020-06-11 Orhan Akal , Zhigang Peng , Gerardo Hermosillo Valadez

Automatic segmentation of tumor lesions is a critical initial processing step for quantitative PET/CT analysis. However, numerous tumor lesion with different shapes, sizes, and uptake intensity may be distributed in different anatomical…

Image and Video Processing · Electrical Eng. & Systems 2022-09-07 Shaonan Zhong , Junyang Mo , Zhantao Liu

We propose a method based on deep learning to perform cardiac segmentation on short axis MRI image stacks iteratively from the top slice (around the base) to the bottom slice (around the apex). At each iteration, a novel variant of U-net is…

Computer Vision and Pattern Recognition · Computer Science 2018-04-26 Qiao Zheng , Hervé Delingette , Nicolas Duchateau , Nicholas Ayache

Cardiac function is of paramount importance for both prognosis and treatment of different pathologies such as mitral regurgitation, ischemia, dyssynchrony and myocarditis. Cardiac behavior is determined by structural and functional…

Computer Vision and Pattern Recognition · Computer Science 2017-08-25 Ariel H. Curiale , Flavio D. Colavecchia , Pablo Kaluza , Roberto A. Isoardi , German Mato

Cardiac segmentation of atriums, ventricles, and myocardium in computed tomography (CT) images is an important first-line task for presymptomatic cardiovascular disease diagnosis. In several recent studies, deep learning models have shown…

Image and Video Processing · Electrical Eng. & Systems 2024-10-01 Sanguk Park , Minyoung Chung

Objectives: Precise segmentation of total extraocular muscles (EOM) and optic nerve (ON) is essential to assess anatomical development and progression of thyroid-associated ophthalmopathy (TAO). We aim to develop a semantic segmentation…

Purpose: To present a high-performing, robust, and flexible deep learning pipeline for automatic segmentation of 30 organs-at-risk (OARs) in head and neck (H&N) cancer patients, using MRI, CT, or both. Method: We trained a segmentation…

Image and Video Processing · Electrical Eng. & Systems 2025-09-08 Sébastien Quetin , Andrew Heschl , Mauricio Murillo , Rohit Murali , Piotr Pater , George Shenouda , Shirin A. Enger , Farhad Maleki

The evaluation of obstructions (stenosis) in coronary arteries is currently done by a physician's visual assessment of coronary angiography video sequences. It is laborious, and can be susceptible to interobserver variation. Prior studies…

Image and Video Processing · Electrical Eng. & Systems 2021-02-01 Chengyang Zhou , Thao Vy Dinh , Heyi Kong , Jonathan Yap , Khung Keong Yeo , Hwee Kuan Lee , Kaicheng Liang

Automated segmentation of anatomical structures is a crucial step in image analysis. For lung segmentation in computed tomography, a variety of approaches exist, involving sophisticated pipelines trained and validated on different datasets.…

Image and Video Processing · Electrical Eng. & Systems 2020-08-21 Johannes Hofmanninger , Florian Prayer , Jeanny Pan , Sebastian Rohrich , Helmut Prosch , Georg Langs

Segmentation of the aorta is crucial for various medical analyses, such as the diagnosis and treatment of cardiovascular diseases. This work presents mathematical models and methods yielding a semi-automatic segmentation of the aorta from…

Medical Physics · Physics 2025-11-17 Konan A. Allaly , Jozef Urban , Karol Mikula

Despite the recent success of deep learning methods at achieving new state-of-the-art accuracy for medical image segmentation, some major limitations are still restricting their deployment into clinics. One major limitation of deep…

Image and Video Processing · Electrical Eng. & Systems 2023-05-30 Lucas Fidon

Accurate segmentation of prostate and surrounding organs at risk is important for prostate cancer radiotherapy treatment planning. We present a fully automated workflow for male pelvic CT image segmentation using deep learning. The…