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Non-linear dimensionality reduction (NLDR) methods such as t-distributed stochastic neighbour embedding (t-SNE) are ubiquitous in the natural sciences, however, the appropriate use of these methods is difficult because of their complex…

Other Statistics · Statistics 2020-12-14 Stuart Lee , Ursula Laa , Dianne Cook

Different unsupervised models for dimensionality reduction like PCA, LLE, Shannon's mapping, tSNE, UMAP, etc. work on different principles, hence, they are difficult to compare on the same ground. Although they are usually good for…

Methodology · Statistics 2024-05-10 Subhrajyoty Roy

We develop theory for nonlinear dimensionality reduction (NLDR). A number of NLDR methods have been developed, but there is limited understanding of how these methods work and the relationships between them. There is limited basis for using…

Machine Learning · Statistics 2018-03-08 Daniel Ting , Michael I. Jordan

This survey is written in summer, 2016. The purpose of this survey is to briefly introduce nonlinear dimensionality reduction (NLDR) in data reduction. The first two NLDR were respectively published in Science in 2000 in which they solve…

Machine Learning · Computer Science 2022-03-22 Ce Ju

Dimensionality reduction techniques aim at representing high-dimensional data in low-dimensional spaces to extract hidden and useful information or facilitate visual understanding and interpretation of the data. However, few of them take…

Machine Learning · Computer Science 2022-10-25 Yan Sun , Yi Han , Jicong Fan

High dimensional data analysis for exploration and discovery includes three fundamental tasks: dimensionality reduction, clustering, and visualization. When the three associated tasks are done separately, as is often the case thus far,…

Machine Learning · Computer Science 2020-12-02 Stan Z. Li , Lirong Wu , Zelin Zang

Data visualisation helps understanding data represented by multiple variables, also called features, stored in a large matrix where individuals are stored in lines and variable values in columns. These data structures are frequently called…

Human-Computer Interaction · Computer Science 2022-07-25 Haseeb Younis , Paul Trust , Rosane Minghim

Dimension reduction (DR) techniques such as t-SNE, UMAP, and TriMAP have demonstrated impressive visualization performance on many real world datasets. One tension that has always faced these methods is the trade-off between preservation of…

Machine Learning · Computer Science 2021-08-27 Yingfan Wang , Haiyang Huang , Cynthia Rudin , Yaron Shaposhnik

Deep neural networks (DNNs) usually contain massive parameters, but there is redundancy such that it is guessed that the DNNs could be trained in low-dimensional subspaces. In this paper, we propose a Dynamic Linear Dimensionality Reduction…

Machine Learning · Computer Science 2021-08-17 Tao Li , Lei Tan , Qinghua Tao , Yipeng Liu , Xiaolin Huang

This paper shows that dimensionality reduction methods such as UMAP and t-SNE, can be approximately recast as MAP inference methods corresponding to a model introduced in Ravuri et al. (2023), that describes the graph Laplacian (an estimate…

Machine Learning · Statistics 2025-05-13 Aditya Ravuri , Neil D. Lawrence

Dimensionality reduction is crucial both for visualization and preprocessing high dimensional data for machine learning. We introduce a novel method based on a hierarchy built on 1-nearest neighbor graphs in the original space which is used…

Computer Vision and Pattern Recognition · Computer Science 2022-05-31 M. Saquib Sarfraz , Marios Koulakis , Constantin Seibold , Rainer Stiefelhagen

Low-dimensional embeddings and visualizations are an indispensable tool for analysis of high-dimensional data. State-of-the-art methods, such as tSNE and UMAP, excel in unveiling local structures hidden in high-dimensional data and are…

Machine Learning · Computer Science 2023-02-01 Jonas Fischer , Rebekka Burkholz , Jilles Vreeken

The goal of dimension reduction tools is to construct a low-dimensional representation of high-dimensional data. These tools are employed for a variety of reasons such as noise reduction, visualization, and to lower computational costs.…

Applications · Statistics 2024-09-20 Justin Lin , Julia Fukuyama

Projection algorithms such as t-SNE or UMAP are useful for the visualization of high dimensional data, but depend on hyperparameters which must be tuned carefully. Unfortunately, iteratively recomputing projections to find the optimal…

Machine Learning · Computer Science 2021-06-28 Gabriel Appleby , Mateus Espadoto , Rui Chen , Samuel Goree , Alexandru Telea , Erik W Anderson , Remco Chang

Classical nonlinear dimensionality reduction (NLDR) techniques like t-SNE, Isomap, and LLE excel at creating low-dimensional embeddings for data visualization but fundamentally lack the ability to map these embeddings back to the original…

Machine Learning · Computer Science 2025-10-16 Riddhish Thakare , Kingdom Mutala Akugri

Dimensionality reduction is an effective method for learning high-dimensional data, which can provide better understanding of decision boundaries in human-readable low-dimensional subspace. Linear methods, such as principal component…

Machine Learning · Computer Science 2020-07-09 Koji Maruhashi , Heewon Park , Rui Yamaguchi , Satoru Miyano

In this paper, the existing Scheduling Dimension Reduction (SDR) methods for Linear Parameter-Varying (LPV) models are reviewed and a Deep Neural Network (DNN) approach is developed that achieves higher model accuracy under scheduling…

Systems and Control · Electrical Eng. & Systems 2020-12-10 P. J. W. Koelewijn , R. Tóth

We first show that the commonly used dimensionality reduction (DR) methods such as t-SNE and LargeVis poorly capture the global structure of the data in the low dimensional embedding. We show this via a number of tests for the DR methods…

Machine Learning · Computer Science 2018-03-05 Ehsan Amid , Manfred K. Warmuth

Nonlinear dimensionality reduction methods have demonstrated top-notch performance in many pattern recognition and image classification tasks. Despite their popularity, they suffer from highly expensive time and memory requirements, which…

Computational Geometry · Computer Science 2014-04-08 Amir Najafi , Amir Joudaki , Emad Fatemizadeh

Dimensionality reduction (DR) is a popular method for preparing and analyzing high-dimensional data. Reduced data representations are less computationally intensive and easier to manage and visualize, while retaining a significant…

Machine Learning · Computer Science 2022-05-02 Avraam Bardos , Ioannis Mollas , Nick Bassiliades , Grigorios Tsoumakas
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