English
Related papers

Related papers: PocketVina Enables Scalable and Highly Accurate Ph…

200 papers

Recent trends in the HPC field have introduced new CPU architectures with improved vectorization capabilities that require optimization to achieve peak performance and thus pose challenges for performance portability. The deployment of…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-09-17 Gianmarco Accordi , Jens Domke , Theresa Pollinger , Davide Gadioli , Gianluca Palermo

Current multimodal large language models (MLLMs) face significant challenges in visual document understanding (VDU) tasks due to the high resolution, dense text, and complex layouts typical of document images. These characteristics demand a…

Computer Vision and Pattern Recognition · Computer Science 2024-12-20 Jiaxin Zhang , Wentao Yang , Songxuan Lai , Zecheng Xie , Lianwen Jin

Simulating drug binding and unbinding is a challenge, as the rugged energy landscapes that separate bound and unbound states require extensive sampling that consumes significant computational resources. Here, we describe the use of…

Video tasks are compute-heavy and thus pose a challenge when deploying in real-time applications, particularly for tasks that require state-of-the-art Vision Transformers (ViTs). Several research efforts have tried to address this challenge…

Computer Vision and Pattern Recognition · Computer Science 2024-07-18 Sreetama Sarkar , Gourav Datta , Souvik Kundu , Kai Zheng , Chirayata Bhattacharyya , Peter A. Beerel

Recent advances in deep learning and computer vision offer an excellent opportunity to investigate high-level visual analysis tasks such as human localization and human pose estimation. Although the performance of human localization and…

Computer Vision and Pattern Recognition · Computer Science 2022-04-21 Somnuk Phon-Amnuaisuk , Ken T. Murata , La-Or Kovavisaruch , Tiong-Hoo Lim , Praphan Pavarangkoon , Takamichi Mizuhara

We explored the Protein DataBank (PDB) to collect protein-ssDNA structures and create a multiconformational docking benchmark including both bound and unbound protein structures. Due to ssDNA high flexibility when not bound, no ssDNA…

Quantitative Methods · Quantitative Biology 2022-10-21 Dominique Mias-Lucquin , Isaure Chauvot de Beauchene

The diffusion of deepfake technologies has sparked serious concerns about its potential misuse across various domains, prompting the urgent need for robust detection methods. Despite advancement, many current approaches prioritize…

Computer Vision and Pattern Recognition · Computer Science 2024-08-19 Yabin Wang , Zhiwu Huang , Su Zhou , Adam Prugel-Bennett , Xiaopeng Hong

Structure-based protein design has attracted increasing interest, with numerous methods being introduced in recent years. However, a universally accepted method for evaluation has not been established, since the wet-lab validation can be…

Quantitative Methods · Quantitative Biology 2023-12-04 Chuanrui Wang , Bozitao Zhong , Zuobai Zhang , Narendra Chaudhary , Sanchit Misra , Jian Tang

Vision-language models (VLMs) have achieved remarkable multimodal understanding and reasoning capabilities, yet remain computationally expensive due to dense visual tokenization. Existing efficiency approaches either merge redundant visual…

Computer Vision and Pattern Recognition · Computer Science 2026-03-30 Aditya Kumar Singh , Hitesh Kandala , Pratik Prabhanjan Brahma , Zicheng Liu , Emad Barsoum

The generation of small molecule candidate (ligand) binding poses in its target protein pocket is important for computer-aided drug discovery. Typical rigid-body docking methods ignore the pocket flexibility of protein, while the more…

Neural and Evolutionary Computing · Computer Science 2023-08-03 Jonathan P. Mailoa , Zhaofeng Ye , Jiezhong Qiu , Chang-Yu Hsieh , Shengyu Zhang

Being accurate, efficient, and compact is essential to a facial landmark detector for practical use. To simultaneously consider the three concerns, this paper investigates a neat model with promising detection accuracy under wild…

Computer Vision and Pattern Recognition · Computer Science 2019-03-05 Xiaojie Guo , Siyuan Li , Jinke Yu , Jiawan Zhang , Jiayi Ma , Lin Ma , Wei Liu , Haibin Ling

Conformation Generation is a fundamental problem in drug discovery and cheminformatics. And organic molecule conformation generation, particularly in vacuum and protein pocket environments, is most relevant to drug design. Recently, with…

Biomolecules · Quantitative Biology 2023-04-21 Haotian Zhang , Jintu Zhang , Huifeng Zhao , Dejun Jiang , Yafeng Deng

Multi-view visual reasoning is essential for intelligent systems that must understand complex environments from sparse and discrete viewpoints, yet existing research has largely focused on single-image or temporally dense video settings. In…

Computer Vision and Pattern Recognition · Computer Science 2026-03-19 Fucai Ke , Zhixi Cai , Boying Li , Long Chen , Beibei Lin , Weiqing Wang , Pari Delir Haghighi , Gholamreza Haffari , Hamid Rezatofighi

Automated polyp segmentation is critical for early colorectal cancer detection and its prevention, yet remains challenging due to weak boundaries, large appearance variations, and limited annotated data. Lightweight segmentation models such…

Computer Vision and Pattern Recognition · Computer Science 2026-04-21 Shivanshu Agnihotri , Snehashis Majhi , Deepak Ranjan Nayak

Single-person human pose estimation facilitates markerless movement analysis in sports, as well as in clinical applications. Still, state-of-the-art models for human pose estimation generally do not meet the requirements of real-life…

Computer Vision and Pattern Recognition · Computer Science 2021-04-12 Daniel Groos , Heri Ramampiaro , Espen A. F. Ihlen

Proteins perform critical processes in all living systems: converting solar energy into chemical energy, replicating DNA, as the basis of highly performant materials, sensing and much more. While an incredible range of functionality has…

Biomolecules · Quantitative Biology 2021-09-29 Leonardo V. Castorina , Rokas Petrenas , Kartic Subr , Christopher W. Wood

Visual localization has traditionally been formulated as a pair-wise pose regression problem. Existing approaches mainly estimate relative poses between two images and employ a late-fusion strategy to obtain absolute pose estimates.…

Computer Vision and Pattern Recognition · Computer Science 2025-12-29 Tianchen Deng , Wenhua Wu , Kunzhen Wu , Guangming Wang , Siting Zhu , Shenghai Yuan , Xun Chen , Guole Shen , Zhe Liu , Hesheng Wang

There has been increasing interest in smart factories powered by robotics systems to tackle repetitive, laborious tasks. One impactful yet challenging task in robotics-powered smart factory applications is robotic grasping: using robotic…

Computer Vision and Pattern Recognition · Computer Science 2022-08-31 Yuhao Chen , E. Zhixuan Zeng , Maximilian Gilles , Alexander Wong

Standard deep learning algorithms are implemented using floating-point real numbers. This presents an obstacle for implementing them on low-end devices which may not have dedicated floating-point units (FPUs). As a result, researchers in…

Machine Learning · Computer Science 2022-05-05 Jaewoo Song , Fangzhen Lin