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Computing a Single-Linkage Dendrogram (SLD) is a key step in the classic single-linkage hierarchical clustering algorithm. Given an input edge-weighted tree $T$, the SLD of $T$ is a binary dendrogram that summarizes the $n-1$ clusterings…

Data Structures and Algorithms · Computer Science 2024-05-14 Laxman Dhulipala , Xiaojun Dong , Kishen N Gowda , Yan Gu

Hierarchical agglomerative clustering (HAC) is a popular algorithm for clustering data, but despite its importance, no dynamic algorithms for HAC with good theoretical guarantees exist. In this paper, we study dynamic HAC on edge-weighted…

Data Structures and Algorithms · Computer Science 2022-07-13 Tom Tseng , Laxman Dhulipala , Julian Shun

We study the problem of dynamically maintaining the connected components of an undirected graph subject to edge insertions and deletions. We give the first parallel algorithm for the problem which is work-efficient, supports batches of…

Data Structures and Algorithms · Computer Science 2024-11-19 Quinten De Man , Laxman Dhulipala , Adam Karczmarz , Jakub Łącki , Julian Shun , Zhongqi Wang

This paper presents \pandora, a novel parallel algorithm for efficiently constructing dendrograms for single-linkage hierarchical clustering, including \hdbscan. Traditional dendrogram construction methods from a minimum spanning tree…

Machine Learning · Computer Science 2025-04-29 Piyush Sao , Andrey Prokopenko , Damien Lebrun-Grandié

We consider the problem of maintaining a hierarchical agglomerative clustering (HAC) in the dynamic setting, when the input is subject to point insertions and deletions. We introduce DynHAC - the first dynamic HAC algorithm for the popular…

Data Structures and Algorithms · Computer Science 2025-01-15 Shangdi Yu , Laxman Dhulipala , Jakub Łącki , Nikos Parotsidis

This paper studies the hierarchical clustering problem, where the goal is to produce a dendrogram that represents clusters at varying scales of a data set. We propose the ParChain framework for designing parallel hierarchical agglomerative…

Data Structures and Algorithms · Computer Science 2022-02-15 Shangdi Yu , Yiqiu Wang , Yan Gu , Laxman Dhulipala , Julian Shun

Hierarchical Agglomerative Clustering (HAC) is an extensively studied and widely used method for hierarchical clustering in $\mathbb{R}^k$ based on repeatedly merging the closest pair of clusters according to an input linkage function $d$.…

Data Structures and Algorithms · Computer Science 2025-07-29 MohammadHossein Bateni , Laxman Dhulipala , Willem Fletcher , Kishen N Gowda , D Ellis Hershkowitz , Rajesh Jayaram , Jakub Łącki

This paper presents new parallel algorithms for generating Euclidean minimum spanning trees and spatial clustering hierarchies (known as HDBSCAN$^*$). Our approach is based on generating a well-separated pair decomposition followed by using…

Data Structures and Algorithms · Computer Science 2021-04-05 Yiqiu Wang , Shangdi Yu , Yan Gu , Julian Shun

Spanning trees of low average stretch on the non-tree edges, as introduced by Alon et al. [SICOMP 1995], are a natural graph-theoretic object. In recent years, they have found significant applications in solvers for symmetric diagonally…

Data Structures and Algorithms · Computer Science 2019-08-01 Sebastian Forster , Gramoz Goranci

Stochastic Gradient Descent (SGD) is a popular algorithm that can achieve state-of-the-art performance on a variety of machine learning tasks. Several researchers have recently proposed schemes to parallelize SGD, but all require…

Optimization and Control · Mathematics 2011-11-14 Feng Niu , Benjamin Recht , Christopher Re , Stephen J. Wright

We derive a statistical model for estimation of a dendrogram from single linkage hierarchical clustering (SLHC) that takes account of uncertainty through noise or corruption in the measurements of separation of data. Our focus is on just…

Machine Learning · Statistics 2015-11-26 Dekang Zhu , Dan P. Guralnik , Xuezhi Wang , Xiang Li , Bill Moran

Obtaining scalable algorithms for hierarchical agglomerative clustering (HAC) is of significant interest due to the massive size of real-world datasets. At the same time, efficiently parallelizing HAC is difficult due to the seemingly…

Data Structures and Algorithms · Computer Science 2022-06-24 Laxman Dhulipala , David Eisenstat , Jakub Łącki , Vahab Mirronki , Jessica Shi

Average linkage Hierarchical Agglomerative Clustering (HAC) is an extensively studied and applied method for hierarchical clustering. Recent applications to massive datasets have driven significant interest in near-linear-time and efficient…

Data Structures and Algorithms · Computer Science 2025-02-06 MohammadHossein Bateni , Laxman Dhulipala , Kishen N Gowda , D Ellis Hershkowitz , Rajesh Jayaram , Jakub Łącki

We study the widely used hierarchical agglomerative clustering (HAC) algorithm on edge-weighted graphs. We define an algorithmic framework for hierarchical agglomerative graph clustering that provides the first efficient $\tilde{O}(m)$ time…

Data Structures and Algorithms · Computer Science 2021-06-11 Laxman Dhulipala , David Eisenstat , Jakub Łącki , Vahab Mirrokni , Jessica Shi

This paper presents algorithms for hierarchical, agglomerative clustering which perform most efficiently in the general-purpose setup that is given in modern standard software. Requirements are: (1) the input data is given by pairwise…

Machine Learning · Statistics 2011-09-13 Daniel Müllner

Hierarchical Density-Based Spatial Clustering of Applications with Noise (HDBSCAN) finds meaningful patterns in spatial data by considering density and spatial proximity. As the clustering algorithm is inherently designed for static…

Databases · Computer Science 2024-12-12 Kayumov Abduaziz , Min Sik Kim , Ji Sun Shin

One of the main challenges for hierarchical clustering is how to appropriately identify the representative points in the lower level of the cluster tree, which are going to be utilized as the roots in the higher level of the cluster tree…

Machine Learning · Statistics 2021-11-16 Wen-Bo Xie , Zhen Liu , Jaideep Srivastava

We give an efficient algorithm for Centroid-Linkage Hierarchical Agglomerative Clustering (HAC), which computes a $c$-approximate clustering in roughly $n^{1+O(1/c^2)}$ time. We obtain our result by combining a new Centroid-Linkage HAC…

Data Structures and Algorithms · Computer Science 2024-06-10 MohammadHossein Bateni , Laxman Dhulipala , Willem Fletcher , Kishen N Gowda , D Ellis Hershkowitz , Rajesh Jayaram , Jakub Łącki

This paper presents new deterministic and distributed low-diameter decomposition algorithms for weighted graphs. In particular, we show that if one can efficiently compute approximate distances in a parallel or a distributed setting, one…

Data Structures and Algorithms · Computer Science 2022-09-07 Václav Rozhoň , Michael Elkin , Christoph Grunau , Bernhard Haeupler

The dynamic trees problem is to maintain a forest subject to edge insertions and deletions while facilitating queries such as connectivity, path weights, and subtree weights. Dynamic trees are a fundamental building block of a large number…

Data Structures and Algorithms · Computer Science 2020-10-27 Umut A. Acar , Daniel Anderson , Guy E. Blelloch , Laxman Dhulipala , Sam Westrick
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