English
Related papers

Related papers: OmniESI: A unified framework for enzyme-substrate …

200 papers

Multimodal deep learning (MDL) has emerged as a transformative approach in computational pathology. By integrating complementary information from multiple data sources, MDL models have demonstrated superior predictive performance across…

Quantitative Methods · Quantitative Biology 2025-11-17 Seth Alain Chang , Muhammad Mueez Amjad , Noorul Wahab , Ethar Alzaid , Nasir Rajpoot , Adam Shephard

Automatic segmentation of diverse heterogeneous brain lesions using multi-modal MRI is a challenging problem in clinical neuroimaging, mainly because of the lack of generalizability and high prediction variance of pathology-specific deep…

Computer Vision and Pattern Recognition · Computer Science 2026-02-24 Md. Mehedi Hassan , Shafqat Alam , Shahriar Ahmed Seam , Maruf Ahmed

Prognostic task is of great importance as it closely related to the survival analysis of patients, the optimization of treatment plans and the allocation of resources. The existing prognostic models have shown promising results on specific…

Image and Video Processing · Electrical Eng. & Systems 2025-01-14 Binyu Zhang , Shichao Li , Junpeng Jian , Zhu Meng , Limei Guo , Zhicheng Zhao

Accurate and timely prediction of tool conditions is critical for intelligent manufacturing systems, where unplanned tool failures can lead to quality degradation and production downtime. In modern industrial environments, predictive…

Artificial Intelligence · Computer Science 2025-11-04 Ziqi Wang , Hailiang Zhao , Yuhao Yang , Daojiang Hu , Cheng Bao , Mingyi Liu , Kai Di , Schahram Dustdar , Zhongjie Wang , Shuiguang Deng

Deep learning has become very popular for tasks such as predictive modeling and pattern recognition in handling big data. Deep learning is a powerful machine learning method that extracts lower level features and feeds them forward for the…

Machine Learning · Computer Science 2018-03-07 Steven Young , Tamer Abdou , Ayse Bener

Biochemical covalent modification networks exhibit a remarkable suite of steady state and dynamical properties such as multistationarity, oscillations, ultrasensitivity and absolute concentration robustness. This paper focuses on conditions…

Molecular Networks · Quantitative Biology 2024-02-29 Badal Joshi , Tung D. Nguyen

Robust quantification of predictive uncertainty is critical for understanding factors that drive weather and climate outcomes. Ensembles provide predictive uncertainty estimates and can be decomposed physically, but both physics and machine…

Fluid-structure interaction (FSI) simulation of biological systems presents significant computational challenges, particularly for applications involving large structural deformations and contact mechanics, such as heart valve dynamics.…

Quantitative Methods · Quantitative Biology 2026-02-13 Ryan T. Black , Steve A. Maas , Wensi Wu , Jalaj Maheshwari , Tzanio Kolev , Jeffrey A. Weiss , Matthew A. Jolley

Neural networks predictions are unreliable when the input sample is out of the training distribution or corrupted by noise. Being able to detect such failures automatically is fundamental to integrate deep learning algorithms into robotics.…

Computer Vision and Pattern Recognition · Computer Science 2020-02-18 Antonio Loquercio , Mattia Segù , Davide Scaramuzza

Addressing the incompleteness problem in knowledge graph remains a significant challenge. Current knowledge graph completion methods have their limitations. For example, ComDensE is prone to overfitting and suffers from the degradation with…

Information Retrieval · Computer Science 2024-10-10 Chuhong Yang , Bin Li , Nan Wu

Stack autoencoder (SAE), as a representative deep network, has unique and excellent performance in feature learning, and has received extensive attention from researchers. However, existing deep SAEs focus on original samples without…

Machine Learning · Computer Science 2022-10-28 Chuanyan Zhou , Jie Ma , Fan Li , Yongming Li , Pin Wang , Xiaoheng Zhang

Automatic emotion recognition has recently gained significant attention due to the growing popularity of deep learning algorithms. One of the primary challenges in emotion recognition is effectively utilizing the various cues (modalities)…

Computer Vision and Pattern Recognition · Computer Science 2023-06-16 Mijanur Palash , Bharat Bhargava

Real-world time series are often governed by complex nonlinear dynamics. Understanding these underlying dynamics is crucial for precise future prediction. While deep learning has achieved major success in time series forecasting, many…

Machine Learning · Computer Science 2026-05-26 Abrar Majeedi , Viswanatha Reddy Gajjala , Satya Sai Srinath Namburi GNVV , Nada Magdi Elkordi , Yin Li

Discovering novel materials with desired properties is essential for driving innovation. Industry 4.0 and smart manufacturing have promised transformative advances in this area through real-time data integration and automated production…

Machine Learning · Computer Science 2025-04-08 Avijit Saha Asru , Hamed Khosravi , Imtiaz Ahmed , Abdullahil Azeem

A comparison is made between conventional Michaelis-Menten kinetics and two models that take into account the duration of the conformational changes that take place at the molecular level during the catalytic cycle of a monomer. The models…

Molecular Networks · Quantitative Biology 2007-12-05 José M. Albornoz , Antonio Parravano

The iterative search process of evolutionary algorithms (EAs) encapsulates optimization knowledge within historical populations and fitness evaluations. Effective utilization of this knowledge is crucial for facilitating knowledge transfer…

Neural and Evolutionary Computing · Computer Science 2026-04-22 Chao Wang , Lingling Li , Licheng Jiao , Jiaxuan Zhao , Fang Liu , Shuyuan Yang

The autonomous evolution of networked AI systems relies heavily on robust environmental perception. However, physical understanding remains brittle in current models because key physical signals are visually ambiguous and sparsely…

Computer Vision and Pattern Recognition · Computer Science 2026-04-08 Minghao Han , Dingkang Yang , Yue Jiang , Yizhou Liu , Lihua Zhang

Large language models (LLMs) often exhibit undesirable behaviors, such as safety violations and hallucinations. Although inference-time steering offers a cost-effective way to adjust model behavior without updating its parameters, existing…

Machine Learning · Computer Science 2026-04-20 Zixuan Weng , Jinghuai Zhang , Kunlin Cai , Ying Li , Peiran Wang , Yuan Tian

Conical intersections serve as critical gateways in photochemical reactions, enabling rapid nonradiative transitions between potential energy surfaces that underpin fundamental processes such as photosynthesis or vision. Their calculation…

Chemical Physics · Physics 2025-02-19 Rhyan Barrett , Christoph Ortner , Julia Westermayr

Protein interactions are important in a broad range of biological processes. Traditionally, computational methods have been developed to automatically predict protein interface from hand-crafted features. Recent approaches employ deep…

Machine Learning · Computer Science 2020-07-21 Yi Liu , Hao Yuan , Lei Cai , Shuiwang Ji