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The escalating cost, extended timelines, and low success rates in pharmaceutical research demand a fundamental rethinking of biotechnology R&D infrastructure. This chapter introduces the concept of the AI-Integrated Biotechnology Hub, a…

Physics and Society · Physics 2025-10-07 Alex Zhavoronkov , Chuen Yan Leung

Problem statement: Standardisation of AI fairness rules and benchmarks is challenging because AI fairness and other ethical requirements depend on multiple factors such as context, use case, type of the AI system, and so on. In this paper,…

Artificial Intelligence · Computer Science 2022-12-22 Avinash Agarwal , Harsh Agarwal

We discuss important aspects of HCI research regarding Research Data Management (RDM) to achieve better publication processes and higher reuse of HCI research results. Various context elements of RDM for HCI are discussed, including…

Human-Computer Interaction · Computer Science 2025-02-03 David Goedicke , Mark Colley , Sebastian S. Feger , Michael Goedicke , Bastian Pfleging , Wendy Ju

The efficacy of AI agents in healthcare research is hindered by their reliance on static, predefined strategies. This creates a critical limitation: agents can become better tool-users but cannot learn to become better strategic planners, a…

Artificial Intelligence · Computer Science 2025-08-08 Huiya Zhao , Yinghao Zhu , Zixiang Wang , Yasha Wang , Junyi Gao , Liantao Ma

In an era characterized by the pervasive integration of artificial intelligence into decision-making processes across diverse industries, the demand for trust has never been more pronounced. This thesis embarks on a comprehensive…

Machine Learning · Statistics 2024-01-18 Alessandro Castelnovo

Artificial Intelligence has proven to be a transformative tool for advancing scientific research across a wide range of disciplines. However, a significant gap still exists between AI and scientific communities, limiting the full potential…

Artificial Intelligence · Computer Science 2025-02-19 Yutong Xie , Yijun Pan , Hua Xu , Qiaozhu Mei

This paper presents multi- and interdisciplinary approaches for finding the appropriate AI technologies for research information. Professional research information management (RIM) is becoming increasingly important as an expressly…

Digital Libraries · Computer Science 2024-05-24 Otmane Azeroual , Tibor Koltay

OLAF (Open Life Science Analysis Framework) is an open-source platform that enables researchers to perform bioinformatics analyses using natural language. By combining large language models (LLMs) with a modular agent-pipe-router…

Quantitative Methods · Quantitative Biology 2025-04-14 Dylan Riffle , Nima Shirooni , Cody He , Manush Murali , Sovit Nayak , Rishikumar Gopalan , Diego Gonzalez Lopez

The rapid growth of multi-source, heterogeneous, and multimodal scientific data has increasingly exposed the limitations of traditional data management. Most existing DeepResearch (DR) efforts focus primarily on web search while overlooking…

Information Retrieval · Computer Science 2026-04-29 Zhuofan Shi , Zijie Guo , Xinjian Ma , Gang Huang , Yun Ma , Xiang Jing

Pediatric Emergency Department (PED) overcrowding presents a significant global challenge, prompting the need for efficient solutions. This paper introduces the BioBridge framework, a novel approach that applies Natural Language Processing…

Computation and Language · Computer Science 2024-12-17 Jangyeong Jeon , Sangyeon Cho , Dongjoon Lee , Changhee Lee , Junyeong Kim

The use of artificial intelligence (AI) in automated disease classification significantly reduces healthcare costs and improves the accessibility of services. However, this transformation has given rise to concerns about the fairness of AI,…

Machine Learning · Computer Science 2024-12-04 Leila Gheisi , Henry Chu , Raju Gottumukkala , Yan Luo , Xingquan Zhu , Mengyu Wang , Min Shi

The question-answering system for Life science research, which is characterized by the rapid pace of discovery, evolving insights, and complex interactions among knowledge entities, presents unique challenges in maintaining a comprehensive…

Computation and Language · Computer Science 2024-08-15 Chengrui Wang , Qingqing Long , Meng Xiao , Xunxin Cai , Chengjun Wu , Zhen Meng , Xuezhi Wang , Yuanchun Zhou

The multi-label classification (MLC) task has increasingly been receiving interest from the machine learning (ML) community, as evidenced by the growing number of papers and methods that appear in the literature. Hence, ensuring proper,…

Machine Learning · Computer Science 2022-11-24 Ana Kostovska , Jasmin Bogatinovski , Andrej Treven , Sašo Džeroski , Dragi Kocev , Panče Panov

Avoiding bias and understanding the real-world consequences of AI-supported decision-making are critical to address fairness and assign accountability. Existing approaches often focus either on technical aspects, such as datasets and…

Computers and Society · Computer Science 2025-11-19 Mattias Brännström , Themis Dimitra Xanthopoulou , Lili Jiang

Addressing fairness in artificial intelligence (AI), particularly in medical AI, is crucial for ensuring equitable healthcare outcomes. Recent efforts to enhance fairness have introduced new methodologies and datasets in medical AI.…

Image and Video Processing · Electrical Eng. & Systems 2024-07-22 Yu Tian , Congcong Wen , Min Shi , Muhammad Muneeb Afzal , Hao Huang , Muhammad Osama Khan , Yan Luo , Yi Fang , Mengyu Wang

In this paper, we introduce FairSense-AI: a multimodal framework designed to detect and mitigate bias in both text and images. By leveraging Large Language Models (LLMs) and Vision-Language Models (VLMs), FairSense-AI uncovers subtle forms…

Computation and Language · Computer Science 2025-03-06 Shaina Raza , Mukund Sayeeganesh Chettiar , Matin Yousefabadi , Tahniat Khan , Marcelo Lotif

Decisions made by various Artificial Intelligence (AI) systems greatly influence our day-to-day lives. With the increasing use of AI systems, it becomes crucial to know that they are fair, identify the underlying biases in their…

Computers and Society · Computer Science 2022-03-15 Avinash Agarwal , Harsh Agarwal , Nihaarika Agarwal

Tackling the information retrieval gap between non-technical database end-users and those with the knowledge of formal query languages has been an interesting area of data management and analytics research. The use of natural language…

Information Retrieval · Computer Science 2020-09-29 Chantal Montgomery , Haruna Isah , Farhana Zulkernine

Many research groups aspire to make data and code FAIR and reproducible, yet struggle because the data and code life cycles are disconnected, executable environments are often missing from published work, and technical skill requirements…

The complexity of human biology and its intricate systems holds immense potential for advancing human health, disease treatment, and scientific discovery. However, traditional manual methods for studying biological interactions are often…

Other Quantitative Biology · Quantitative Biology 2025-01-24 Himanshu Buckchash , Gyanendra Kumar Verma , Dilip K. Prasad
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