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The increasing volume of ecologically and biologically relevant data has revealed a wide collection of emergent patterns in living systems. Analyzing different datasets, ranging from metabolic gene-regulatory to species interaction…

Physics and Society · Physics 2019-12-13 Daniel M. Busiello , Samir Suweis , Jorge Hidalgo , Amos Maritan

Dormancy is a widespread adaptive strategy that enables populations to persist in fluctuating environments, yet how its benefits depend on the temporal structure of environmental variability remains unclear. We examine how dormancy…

Populations and Evolution · Quantitative Biology 2025-12-08 Jorge Hidalgo , Lorenzo Fant , Rafael Rubio de Casas , Miguel A. Muñoz

Diversity is a central concept in many fields. Despite its importance, there is no unified methodological framework to measure diversity and its three components of variety, balance and disparity. Current approaches take into account…

Populations and Evolution · Quantitative Biology 2019-02-27 Alje van Dam

Computer vision methods have demonstrated considerable potential to streamline ecological and biological workflows, with a growing number of datasets and models becoming available to the research community. However, these resources focus…

Ecological management and decision-making typically focus on uncertainty about the future, but surprisingly little is known about how to account for uncertainty of the present: that is, the realities of having only partial or imperfect…

Populations and Evolution · Quantitative Biology 2019-01-01 Milad Memarzadeh , Carl Boettiger

With even the most trivial of applications now being written on top of millions of lines code of libraries, API's, and programming languages, much of the complexity that used to exist when designing software has been abstracted away to…

Software Engineering · Computer Science 2017-11-29 Charles Hathaway , Ron Eglash , Mukkai Krishnamoorthy

Approximate functional dependencies (AFDs) are functional dependencies (FDs) that "almost" hold in a relation. While various measures have been proposed to quantify the level to which an FD holds approximately, they are difficult to compare…

This is the second of two papers dedicated to the relationship between population models of competition and biodiversity. Here we consider species assembly models where the population dynamics is kept far from fixed points through the…

Populations and Evolution · Quantitative Biology 2007-05-23 Ugo Bastolla , Michael Lässig , Susanna C. Manrubia , Angelo Valleriani

We explore how physical scale and population size shape the emergence of complex behaviors in open-ended ecological environments. In our setting, agents are unsupervised and have no explicit rewards or learning objectives but instead evolve…

In this review article we explore several recent advances in the quantitative modeling of financial markets. We begin with the Efficient Markets Hypothesis and describe how this controversial idea has stimulated a number of new directions…

adap-org · Physics 2009-10-31 J. Doyne Farmer , Andrew W. Lo

Problems in econometrics, insurance, reliability engineering, and statistics quite often rely on the assumption that certain functions are non-decreasing. To satisfy this requirement, researchers frequently model the underlying phenomena…

Applications · Statistics 2015-02-26 Danang Teguh Qoyyimi , Ricardas Zitikis

Ecological forecasts are model-based statements about currently unknown ecosystem states in time or space. For a model forecast to be useful to inform decision makers, model validation and verification determine adequateness. The measure of…

A good process model is expected not only to reflect the behavior of the process, but also to be as easy to read and understand as possible. Because preferences vary across different applications, numerous measures provide ways to reflect…

Formal Languages and Automata Theory · Computer Science 2024-08-23 Patrizia Schalk , Adam Burke , Robert Lorenz

Relations among species in ecosystems can be represented by complex networks where both negative (competition) and positive (mutualism) interactions are concurrently present. Recently, it has been shown that many ecosystems can be cast into…

Physics and Society · Physics 2017-03-20 Carlos Gracia-Lázaro , Laura Hernández , Javier Borge-Holthoefer , Yamir Moreno

We study the problem of testing the equivalence of functional parameters (such as the mean or variance function) in the two sample functional data problem. In contrast to previous work, which reduces the functional problem to a multiple…

Statistics Theory · Mathematics 2020-04-28 Holger Dette , Kevin Kokot

Predicting the adaptation of populations to a changing environment is crucial to assess the impact of human activities on biodiversity. Many theoretical studies have tackled this issue by modeling the evolution of quantitative traits…

Analysis of PDEs · Mathematics 2022-06-28 Jimmy Garnier , O Cotto , T Bourgeron , E Bouin , T Lepoutre , O Ronce , V Calvez

Improvements in large language models have led to increasing optimism that they can serve as reliable evaluators of natural language generation outputs. In this paper, we challenge this optimism by thoroughly re-evaluating five…

Computation and Language · Computer Science 2025-01-31 Ameya Godbole , Robin Jia

The unprecedented extension of the human lifespan necessitates a parallel evolution in how we quantify the quality of aging and its socioeconomic impact. Traditional metrics focusing on Healthspan (years free of disease) overlook the…

Quantitative Methods · Quantitative Biology 2026-03-19 Alex Zhavoronkov , Dominika Wilczok

Accurate estimation of wildlife density is vital for effective ecological monitoring, conservation, and management. Line transect sampling, a central technique in distance sampling, relies on selecting an appropriate detection function to…

Methodology · Statistics 2025-07-16 Midhat M. Edous , Omar M. Eidous

Simplified mechanistic models in ecology have been criticized for the fact that a good fit to data does not imply the mechanism is true: pattern does not equal process. In parallel, the maximum entropy principle (MaxEnt) has been applied in…

Populations and Evolution · Quantitative Biology 2017-05-02 James P. O'Dwyer , Andrew Rominger , Xiao Xiao