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Graph Neural Networks (GNNs) are routinely used in molecular physics, social sciences, and economics to model many-body interactions in graph-like systems. However, GNNs are inherently local and can suffer from information flow bottlenecks.…

Computational Physics · Physics 2025-02-21 Alessandro Caruso , Jacopo Venturin , Lorenzo Giambagli , Edoardo Rolando , Frank Noé , Cecilia Clementi

Adversarial learning and the robustness of Graph Neural Networks (GNNs) are topics of widespread interest in the machine learning community, as documented by the number of adversarial attacks and defenses designed for these purposes. While…

Machine Learning · Computer Science 2026-05-08 Tran Gia Bao Ngo , Zulfikar Alom , Federico Errica , Murat Kantarcioglu , Cuneyt Gurcan Akcora

This study explores the effectiveness of graph neural networks (GNNs) for vulnerability detection in software code, utilizing a real-world dataset of Java vulnerability-fixing commits. The dataset's structure, based on the number of…

Cryptography and Security · Computer Science 2024-06-19 Ravil Mussabayev

Graph Neural Networks (GNNs) have been increasingly deployed in a plethora of applications. However, the graph data used for training may contain sensitive personal information of the involved individuals. Once trained, GNNs typically…

Machine Learning · Computer Science 2024-07-30 Yushun Dong , Binchi Zhang , Zhenyu Lei , Na Zou , Jundong Li

Malicious software (malware) poses an increasing threat to the security of communication systems as the number of interconnected mobile devices increases exponentially. While some existing malware detection and classification approaches…

Machine Learning · Computer Science 2021-06-07 Julian Busch , Anton Kocheturov , Volker Tresp , Thomas Seidl

Graph Neural Networks (GNNs) have recently been applied to graph learning tasks and achieved state-of-the-art (SOTA) results. However, many competitive methods run GNNs multiple times with subgraph extraction and customized labeling to…

Machine Learning · Computer Science 2023-02-14 Lecheng Kong , Yixin Chen , Muhan Zhang

Graph Neural Networks (GNNs) have been widely used for graph analysis. Federated Graph Learning (FGL) is an emerging learning framework to collaboratively train graph data from various clients. Although FGL allows client data to remain…

Machine Learning · Computer Science 2025-09-25 Tong Cheng , Jie Fu , Xinpeng Ling , Huifa Li , Zhili Chen , Haifeng Qian , Junqing Gong

Graph Neural Networks (GNNs) are a popular technique for modelling graph-structured data and computing node-level representations via aggregation of information from the neighborhood of each node. However, this aggregation implies an…

Machine Learning · Computer Science 2022-08-30 Ameya Daigavane , Gagan Madan , Aditya Sinha , Abhradeep Guha Thakurta , Gaurav Aggarwal , Prateek Jain

Graph neural networks (GNNs) are a popular class of parametric model for learning over graph-structured data. Recent work has argued that GNNs primarily use the graph for feature smoothing, and have shown competitive results on benchmark…

Machine Learning · Computer Science 2020-11-20 Lingfan Yu , Jiajun Shen , Jinyang Li , Adam Lerer

Graph neural networks (GNNs) provide important prospective insights in applications such as social behavior analysis and financial risk analysis based on their powerful learning capabilities on graph data. Nevertheless, GNNs' predictive…

Machine Learning · Computer Science 2024-12-23 Yuecen Wei , Xingcheng Fu , Lingyun Liu , Qingyun Sun , Hao Peng , Chunming Hu

Graph neural networks (GNNs) have exhibited superior performance in various classification tasks on graph-structured data. However, they encounter the potential vulnerability from the link stealing attacks, which can infer the presence of a…

Machine Learning · Computer Science 2025-05-14 Jiadong Lou , Xu Yuan , Rui Zhang , Xingliang Yuan , Neil Gong , Nian-Feng Tzeng

Along with the advent of deep neural networks came various methods of exploitation, such as fooling the classifier or contaminating its training data. Another such attack is known as model extraction, where provided API access to some black…

Machine Learning · Computer Science 2019-12-18 David DeFazio , Arti Ramesh

Graphs serve as generic tools to encode the underlying relational structure of data. Often this graph is not given, and so the task of inferring it from nodal observations becomes important. Traditional approaches formulate a convex inverse…

Machine Learning · Computer Science 2024-06-24 Max Wasserman , Gonzalo Mateos

Graph Neural Networks (GNNs) are important across different domains, such as social network analysis and recommendation systems, due to their ability to model complex relational data. This paper introduces subgraph queries as a new task for…

Machine Learning · Computer Science 2024-08-09 Erfaneh Mahmoudzadeh , Parmis Naddaf , Kiarash Zahirnia , Oliver Schulte

Graph neural networks (GNNs) have found successful applications in various graph-related tasks. However, recent studies have shown that many GNNs are vulnerable to adversarial attacks. In a vast majority of existing studies, adversarial…

Machine Learning · Computer Science 2022-10-25 Junyuan Fang , Haixian Wen , Jiajing Wu , Qi Xuan , Zibin Zheng , Chi K. Tse

Graph Neural Networks (GNNs) have become widely used in the field of graph mining. However, these networks are vulnerable to structural perturbations. While many research efforts have focused on analyzing vulnerability through poisoning…

Artificial Intelligence · Computer Science 2023-12-13 Yuwei Han , Yuni Lai , Yulin Zhu , Kai Zhou

Heterogeneous molecular entities and their interactions, commonly depicted as a network, are crucial for advancing our systems-level understanding of biology. With recent advancements in high-throughput data generation and a significant…

Quantitative Methods · Quantitative Biology 2026-03-18 Kishan KC , Rui Li , Paribesh Regmi , Anne R. Haake

Graph Neural Networks (GNNs) have demonstrated impressive performance across diverse graph-based tasks by leveraging message passing to capture complex node relationships. However, on large-scale real-world graphs, GNNs face two major…

Machine Learning · Computer Science 2026-03-10 Xiang Li , Jianpeng Qi , Haobing Liu , Yuan Cao , Guoqing Chao , Zhongying Zhao , Junyu Dong , Xinwang Liu , Yanwei Yu

We analyze the performance of graph neural network (GNN) architectures from the perspective of random graph theory. Our approach promises to complement existing lenses on GNN analysis, such as combinatorial expressive power and worst-case…

Machine Learning · Computer Science 2023-10-12 Drake Brown , Trevor Garrity , Kaden Parker , Jason Oliphant , Stone Carson , Cole Hanson , Zachary Boyd

Managing microservice architectures in distributed systems is complex and resource intensive due to the high frequency and dynamic nature of inter service interactions. Accurate prediction of these future interactions can enhance adaptive…

Machine Learning · Computer Science 2025-01-28 Ghazal Khodabandeh , Alireza Ezaz , Majid Babaei , Naser Ezzati-Jivan