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We study the computations that Bayesian agents undertake when exchanging opinions over a network. The agents act repeatedly on their private information and take myopic actions that maximize their expected utility according to a fully…

Statistics Theory · Mathematics 2022-01-21 Jan Hązła , Ali Jadbabaie , Elchanan Mossel , M. Amin Rahimian

In biological systems, sensing is not performed by the brain alone: the body deforms, vibrates, and filters external stimuli before they are transduced into neural signals. In engineered systems, this processing burden is placed largely on…

Neurons and Cognition · Quantitative Biology 2026-05-26 Kyungmi Na , Yifei Li , Xinyi Yang , Bolei Deng

The energy dissipated by a living organism is commonly identified with heat generation. However, as cells exchange metabolites with their environment they also dissipate energy in the form of chemical entropy. How dissipation is distributed…

Other Quantitative Biology · Quantitative Biology 2025-10-09 Tommaso Cossetto , Jonathan Rodenfels , Pablo Sartori

Plants exchange information through multiple modalities, including chemical, electrical, mycorrhizal, and acoustic signaling, which collectively support survival, defense, and adaptation. While these processes are well documented in…

Signal Processing · Electrical Eng. & Systems 2025-09-11 Ahmet B. Kilic , Ozgur B. Akan

Information transmission in biological signaling circuits has often been described using the metaphor of a noise filter. Cellular systems need accurate, real-time data about their environmental conditions, but the biochemical reaction…

Molecular Networks · Quantitative Biology 2019-02-27 David Hathcock , James Sheehy , Casey Weisenberger , Efe Ilker , Michael Hinczewski

Our planet is roughly closed to matter, but open to energy input from the sun. However, to harness this energy, organisms must transform matter from one chemical (redox) state to another. For example, photosynthetic organisms can capture…

Populations and Evolution · Quantitative Biology 2024-03-04 Akshit Goyal , Avi I. Flamholz , Alexander P. Petroff , Arvind Murugan

How do organisms recognize their environment by acquiring knowledge about the world, and what actions do they take based on this knowledge? This article examines hypotheses about organisms' adaptation to the environment from machine…

Neurons and Cognition · Quantitative Biology 2019-03-01 Hideaki Shimazaki

Biological cells encode information about their environment through biochemical signaling networks that control their internal state and response. This information is often encoded in the dynamical patterns of the signaling molecules,…

Molecular Networks · Quantitative Biology 2023-04-24 Lauritz Hahn , Aleksandra M. Walczak , Thierry Mora

Presented with sensory challenges, living cells employ extensive noisy, fluctuating signalling and communication among themselves to compute a physiologically proper response which often results in symmetry breaking. We propose, based on…

Biological Physics · Physics 2022-06-17 Dean Korošak , Andraž Stožer , Marjan Slak Rupnik

Our knowledge of how individual cells self-organize to form complex multicellular systems is being revolutionized by a data outburst, coming from high-throughput experimental breakthroughs such as single-cell RNA sequencing and spatially…

Cell Behavior · Quantitative Biology 2021-04-20 Gabriel Torregrosa , Jordi Garcia-Ojalvo

In our understanding, a mind-map is an adaptive engine that basically works incrementally on the fundament of existing transactional streams. Generally, mind-maps consist of symbolic cells that are connected with each other and that become…

Neural and Evolutionary Computing · Computer Science 2009-02-19 Claudine Brucks , Michael Hilker , Christoph Schommer , Cynthia Wagner , Ralph Weires

Photosynthesis is the basic process used by plants to convert light energy in reaction centers into chemical energy. The high efficiency of this process is not yet understood today. Using the formalism for the description of open quantum…

Biological Physics · Physics 2017-06-12 Hichem Eleuch , Ingrid Rotter

Throughout our history, we, humans, have sought to better control and understand our environment. To this end, we have extended our natural senses with a host of sensors-tools that enable us to detect both the very large, such as the…

Biological Physics · Physics 2023-06-09 Kherim Willems

It has been repeatedly proposed to expand the scope for SETI, and one of the suggested alternatives to radio is the biological media. Genomic DNA is already used on Earth to store non-biological information. Though smaller in capacity, but…

Other Quantitative Biology · Quantitative Biology 2017-06-13 Vladimir I. shCherbak , Maxim A. Makukov

Human decisional processes result from the employment of selected quantities of relevant information, generally synthesized from environmental incoming data and stored memories. Their main goal is the production of an appropriate and…

Artificial Intelligence · Computer Science 2016-09-08 Graziano Barnabei , Franco Bagnoli , Ciro Conversano , Elena Lensi

Living systems are often described utilizing informational analogies. An important open question is whether information is merely a useful conceptual metaphor, or intrinsic to the operation of biological systems. To address this question,…

Molecular Networks · Quantitative Biology 2015-08-19 Hyunju Kim , Paul Davies , Sara Imari Walker

Brain function results from communication between neurons connected by complex synaptic networks. Synapses are themselves highly complex and diverse signaling machines, containing protein products of hundreds of different genes, some in…

Computer Vision and Pattern Recognition · Computer Science 2017-07-05 Anish K. Simhal , Cecilia Aguerrebere , Forrest Collman , Joshua T. Vogelstein , Kristina D. Micheva , Richard J. Weinberg , Stephen J. Smith , Guillermo Sapiro

In recent years, several studies have provided insight on the functioning of the brain which consists of neurons and form networks via interconnection among them by synapses. Neural networks are formed by interconnected systems of neurons,…

Neurons and Cognition · Quantitative Biology 2021-01-22 Martin C. Nwadiugwu

This explanation of what a brain is and does rests on informational first principles, because information theory, like its parent theory thermodynamics, is mathematically sacrosanct, itself resting on real-valued probability.Just as…

Neurons and Cognition · Quantitative Biology 2014-10-01 William Softky

Biological organisms are simple at heart: cells, their basic units, perform a variety of behaviors by expressing proteins from DNA-encoded genes. Gene expression though depends on sets of often-convoluted regulatory interactions known as…

Molecular Networks · Quantitative Biology 2025-08-19 Kyle R. Allison
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