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With the recent progress of Large Language Models (LLMs), there is a growing interest in applying these models to solve complex and challenging problems. Modern LLMs, capable of processing long contexts and generating verbalized…

Computation and Language · Computer Science 2026-04-14 WonJin Yoon , Kangyu Zhu , Ian Bulovic , Autumn Sehy , Yanjun Gao , Dmitriy Dligach , Majid Afshar , Timothy A. Miller

Large language models (LLMs) have demonstrated remarkable performance on various medical benchmarks, but their capabilities across different cognitive levels remain underexplored. Inspired by Bloom's Taxonomy, we propose a…

Computation and Language · Computer Science 2025-06-11 Yuxuan Zhou , Xien Liu , Chenwei Yan , Chen Ning , Xiao Zhang , Boxun Li , Xiangling Fu , Shijin Wang , Guoping Hu , Yu Wang , Ji Wu

Large Language Models (LLMs) have fundamentally transformed approaches to Natural Language Processing (NLP) tasks across diverse domains. In healthcare, accurate and cost-efficient text classification is crucial, whether for clinical notes…

Computation and Language · Computer Science 2026-02-16 Hajar Sakai , Sarah S. Lam

Large language models (LLMs) have demonstrated strong performance on medical benchmarks, including question answering and diagnosis. To enable their use in clinical settings, LLMs are typically further adapted through continued pretraining…

Motivation: Phenotype concept recognition (CR) is a fundamental task in biomedical text mining. However, existing methods either require ontology-specific training, making them struggle to generalize across diverse text styles and evolving…

Computation and Language · Computer Science 2026-04-06 Yicheng Tao , Yuanhao Huang , Yiqun Wang , Xin Luo , Jie Liu

Large language models (LLMs) have shown strong ability in generating rich representations across domains such as natural language processing and generation, computer vision, and multimodal learning. However, their application in biomedical…

Genomics · Quantitative Biology 2025-09-30 Luxuan Zhang , Douglas Jiang , Qinglong Wang , Haoqi Sun , Feng Tian

Evaluating AI-generated medical image segmentations for clinical acceptability poses a significant challenge, as traditional pixelagreement metrics often fail to capture true diagnostic utility. This paper introduces Hierarchical Clinical…

Image and Video Processing · Electrical Eng. & Systems 2025-06-03 Jiaxi Sheng , Leyi Yu , Haoyue Li , Yifan Gao , Xin Gao

Semantic role labeling (SRL) is a central natural language processing task for understanding predicate-argument structures within texts and enabling downstream applications. Despite extensive research, comprehensive surveys that critically…

Computation and Language · Computer Science 2026-04-08 Huiyao Chen , Meishan Zhang , Jing Li , Lilja Øvrelid , Jan Hajič , Hao Fei , Min Zhang

Large Language Models (LLMs) have been emerging as prominent AI models for solving many natural language tasks due to their high performance (e.g., accuracy) and capabilities in generating high-quality responses to the given inputs.…

Neural and Evolutionary Computing · Computer Science 2026-04-22 Rachmad Vidya Wicaksana Putra , Pasindu Wickramasinghe , Muhammad Shafique

Large Language Models (LLMs) encode meanings of words in the form of distributed semantics. Distributed semantics capture common statistical patterns among language tokens (words, phrases, and sentences) from large amounts of data. LLMs…

Computation and Language · Computer Science 2023-06-27 Yuxin Zi , Kaushik Roy , Vignesh Narayanan , Manas Gaur , Amit Sheth

We address the task of hierarchical multi-label classification (HMC) of scientific documents at an industrial scale, where hundreds of thousands of documents must be classified across thousands of dynamic labels. The rapid growth of…

Artificial Intelligence · Computer Science 2024-12-09 Seyed Amin Tabatabaei , Sarah Fancher , Michael Parsons , Arian Askari

The integration of Large Language Models (LLMs) into recommender systems has led to substantial performance improvements. However, this often comes at the cost of diminished recommendation diversity, which can negatively impact user…

Information Retrieval · Computer Science 2025-01-07 Jiaju Chen , Chongming Gao , Shuai Yuan , Shuchang Liu , Qingpeng Cai , Peng Jiang

This research pioneers the use of fine-tuned Large Language Models (LLMs) to automate Systematic Literature Reviews (SLRs), presenting a significant and novel contribution in integrating AI to enhance academic research methodologies. Our…

Computation and Language · Computer Science 2025-02-21 Teo Susnjak , Peter Hwang , Napoleon H. Reyes , Andre L. C. Barczak , Timothy R. McIntosh , Surangika Ranathunga

Adapting pretrained language models to novel domains, such as clinical applications, traditionally involves retraining their entire set of parameters. Parameter-Efficient Fine-Tuning (PEFT) techniques for fine-tuning language models…

Computation and Language · Computer Science 2024-06-11 Aryo Pradipta Gema , Pasquale Minervini , Luke Daines , Tom Hope , Beatrice Alex

Large language models (LLMs) often make reasoning errors when solving mathematical problems, and how to automatically detect and correct these errors has become an important research direction. However, existing approaches \textit{mainly…

Computation and Language · Computer Science 2025-11-19 Biaojie Zeng , Min Zhang , Juan Zhou , Fengrui Liu , Ruiyang Huang , Xin Lin

Synthetic data generation using large language models (LLMs) demonstrates substantial promise in addressing biomedical data challenges and shows increasing adoption in biomedical research. This study systematically reviews recent advances…

Computation and Language · Computer Science 2026-02-18 Hanshu Rao , Weisi Liu , Haohan Wang , I-Chan Huang , Zhe He , Xiaolei Huang

Accurate prediction of resource consumption and runtime for cloud workflow jobs is critical for scheduling efficiency, yet remains challenging due to the semi-structured nature of job configurations -- comprising shell commands,…

Machine Learning · Computer Science 2026-05-18 Yuxuan Yin , Shengke Zhou , Yunjie Zhang , Ajay Mohindra , Boxun Xu , Peng Li

Liver cirrhosis is a major global health problem causing millions of deaths annually, and timely detection with aggressive treatment can significantly improve patients' quality of life. Modelling complex diseases from biomedical data is…

Other Quantitative Biology · Quantitative Biology 2026-04-29 Xueyuan Huang , Yuheng Wang , Yuanzhi He , Siqi Gou , Lu Bai , Wenqian Wu , Peifeng Liu , Aijia Wang , Tianhui Fan , Ze Zhou , Jiayu Xu

Large language models (LLMs) have achieved remarkable progress across domains and applications but face challenges such as high fine-tuning costs, inference latency, limited edge deployability, and reliability concerns. Small language…

Computation and Language · Computer Science 2025-11-06 Fali Wang , Jihai Chen , Shuhua Yang , Ali Al-Lawati , Linli Tang , Hui Liu , Suhang Wang

Anomaly detection in computational workflows is critical for ensuring system reliability and security. However, traditional rule-based methods struggle to detect novel anomalies. This paper leverages large language models (LLMs) for…

Software Engineering · Computer Science 2024-07-26 Hongwei Jin , George Papadimitriou , Krishnan Raghavan , Pawel Zuk , Prasanna Balaprakash , Cong Wang , Anirban Mandal , Ewa Deelman