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Conan is a C++ library created for the accurate and efficient modelling, inference and analysis of complex networks. It implements the generation and modification of graphs according to several published models, as well as the unexpensive…

Quantitative Methods · Quantitative Biology 2010-12-02 Ricardo Honorato-Zimmer , Bryan Reynaert , Ignacio Vergara , Tomas Perez-Acle

Background: The study of genome-scale metabolic models and their underlying networks is one of the most important fields in systems biology. The complexity of these models and their description makes the use of computational tools an…

Molecular Networks · Quantitative Biology 2012-12-03 D. Gamermann , A. Montagud , R. A. Jaime Infante , J. Triana , P. F. de Córdoba , J. F. Urchueguía

Python is rapidly becoming the lingua franca of machine learning and scientific computing. With the broad use of frameworks such as Numpy, SciPy, and TensorFlow, scientific computing and machine learning are seeing a productivity boost on…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-09-01 Zane Fink , Simeng Liu , Jaemin Choi , Matthias Diener , Laxmikant V. Kale

Cyanure is an open-source C++ software package with a Python interface. The goal of Cyanure is to provide state-of-the-art solvers for learning linear models, based on stochastic variance-reduced stochastic optimization with acceleration…

Machine Learning · Statistics 2019-12-23 Julien Mairal

Process consistency checking (PCC), an interdiscipline of natural language processing (NLP) and business process management (BPM), aims to quantify the degree of (in)consistencies between graphical and textual descriptions of a process.…

Computation and Language · Computer Science 2019-05-17 Chen Qian , Lijie Wen , Akhil Kumar

This paper presents an approach to model an unknown Ladder Logic based Programmable Logic Controller (PLC) program consisting of Boolean logic and counters using Process Mining techniques. First, we tap the inputs and outputs of a PLC to…

Systems and Control · Computer Science 2019-09-24 Julian Theis , Ilia Mokhtarian , Houshang Darabi

This paper puts forward the vision of creating a library of neural-network-based models for power system simulations. Traditional numerical solvers struggle with the growing complexity of modern power systems, necessitating faster and more…

Systems and Control · Electrical Eng. & Systems 2025-02-11 Ioannis Karampinis , Petros Ellinas , Ignasi Ventura Nadal , Rahul Nellikkath , Spyros Chatzivasileiadis

Mobile computing systems, service-based systems and some other systems with mobile interacting components have recently received much attention. However, because of their characteristics such as mobility and disconnection, it is difficult…

Software Engineering · Computer Science 2021-11-04 Zhijun Ding , Ru Yang , Puwen Cui , MengChu Zhou , Changjun Jiang

The purpose of modeling enterprise architecture and analysis of it is to ease decision making about architecture of information systems. Planning is one of the most important tasks in an organization and has a major role in increasing the…

Software Engineering · Computer Science 2014-04-14 Saied Pashazadeh , Elham Abdolrahimi Niyari

Classical Petri nets provide a canonical model of concurrency, with unfolding semantics linking nets, occurrence nets, and event structures. No comparable framework exists for quantum concurrency: existing ''quantum Petri nets'' lack…

Logic in Computer Science · Computer Science 2025-08-21 Julien Saan Joachim , Marc de Visme , Stefan Haar

Petri nets are a well-known model of concurrency and provide an ideal setting for the study of fundamental aspects in concurrent systems. Despite their simplicity, they still lack a satisfactory causally reversible semantics. We develop…

Logic in Computer Science · Computer Science 2023-06-22 Hernán Melgratti , Claudio Antares Mezzina , Irek Ulidowski

Purpose: Recently, several attempts were conducted to transfer deep learning to medical image reconstruction. An increasingly number of publications follow the concept of embedding the CT reconstruction as a known operator into a neural…

Computer Vision and Pattern Recognition · Computer Science 2020-07-01 Christopher Syben , Markus Michen , Bernhard Stimpel , Stephan Seitz , Stefan Ploner , Andreas K. Maier

In recent years, tree tensor network methods have proven capable of simulating quantum many-body and other high-dimensional systems. This work is a user guide to our Python library PyTreeNet. It includes code examples and exercises to…

Quantum Physics · Physics 2024-07-19 Richard M. Milbradt , Qunsheng Huang , Christian B. Mendl

Python is a popular, widely used, and general-purpose programming language. In spite of its ever-growing community, researchers have not performed much analysis on Python's topics, trends, and technologies which provides insights for…

Software Engineering · Computer Science 2020-04-15 Hamed Tahmooresi , Abbas Heydarnoori , Alireza Aghamohammadi

MCP Server Proto-OKN (mcp-proto-okn) is a Python-based Model Context Protocol server that enables AI assistants to discover, inspect, query and integrate scientific knowledge graphs through natural language. The server provides graph…

Classical Petri nets provide a canonical model of concurrency, with unfolding semantics linking nets, occurrence nets, and event structures. No comparable framework exists for quantum concurrency: existing ''quantum Petri nets'' lack…

Logic in Computer Science · Computer Science 2025-09-18 Julien Saan Joachim , Marc de Visme , Stefan Haar , Glynn Winskel

Collaboration mining develops discovery, conformance checking, and enhancement techniques for collaboration processes. The collaboration process model is key to represent the discovery result. As for process mining in general, Petri Net…

Formal Languages and Automata Theory · Computer Science 2023-09-13 Janik-Vasily Benzin , Stefanie Rinderle-Ma

Integrating deep learning techniques, particularly language models (LMs), with knowledge representation techniques like ontologies has raised widespread attention, urging the need of a platform that supports both paradigms. Although…

Artificial Intelligence · Computer Science 2024-03-12 Yuan He , Jiaoyan Chen , Hang Dong , Ian Horrocks , Carlo Allocca , Taehun Kim , Brahmananda Sapkota

Probabilistic numerical methods (PNMs) solve numerical problems via probabilistic inference. They have been developed for linear algebra, optimization, integration and differential equation simulation. PNMs naturally incorporate prior…

The Python colorspace package provides a toolbox for mapping between different color spaces which can then be used to generate a wide range of perceptually-based color palettes for qualitative or quantitative (sequential or diverging)…

Graphics · Computer Science 2025-10-07 Reto Stauffer , Achim Zeileis
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