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Learned denoisers play a fundamental role in various signal generation (e.g., diffusion models) and reconstruction (e.g., compressed sensing) architectures, whose success derives from their ability to leverage low-dimensional structure in…

Machine Learning · Computer Science 2025-08-14 Shiyu Wang , Mariam Avagyan , Yihan Shen , Arnaud Lamy , Tingran Wang , Szabolcs Márka , Zsuzsa Márka , John Wright

Overparameterized shallow neural networks admit substantial parameter redundancy: distinct parameter vectors may represent the same predictor due to hidden-unit permutations, rescalings, and related symmetries. As a result, geometric…

Machine Learning · Computer Science 2026-03-24 Hang-Cheng Dong , Pengcheng Cheng

Simultaneous recordings from N electrodes generate N-dimensional time series that call for efficient representations to expose relevant aspects of the underlying dynamics. Binning the time series defines neural activity vectors that…

Neurons and Cognition · Quantitative Biology 2017-07-05 Gabriel Baglietto , Guido Gigante , Paolo Del Giudice

Deducing the structure of neural circuits is one of the central problems of modern neuroscience. Recently-introduced calcium fluorescent imaging methods permit experimentalists to observe network activity in large populations of neurons,…

Applications · Statistics 2011-07-22 Yuriy Mishchencko , Joshua T. Vogelstein , Liam Paninski

A key to deciphering the inner workings of neural networks is understanding what a model has learned. Promising methods for discovering learned features are based on analyzing activation values, whereby current techniques focus on analyzing…

Machine Learning · Computer Science 2022-06-23 Alex Bäuerle , Daniel Jönsson , Timo Ropinski

Diffusion models often generate novel samples even when the learned score is only \emph{coarse} -- a phenomenon not accounted for by the standard view of diffusion training as density estimation. In this paper, we show that, under the…

Machine Learning · Computer Science 2026-03-26 Zebang Shen , Ya-Ping Hsieh , Niao He

We propose two graph neural network layers for graphs with features in a Riemannian manifold. First, based on a manifold-valued graph diffusion equation, we construct a diffusion layer that can be applied to an arbitrary number of nodes and…

Machine Learning · Computer Science 2025-02-26 Martin Hanik , Gabriele Steidl , Christoph von Tycowicz

Neuronal firing activities have attracted a lot of attention since a large population of spatiotemporal patterns in the brain is the basis for adaptive behavior and can also reveal the signs for various neurological disorders including…

Neurons and Cognition · Quantitative Biology 2017-03-13 Wenyuan Li , Igor V. Ovchinnikov , Honglin Chen , Zhe Wang , Albert Lee , Hochul Lee , Carlos Cepeda , Robert N. Schwartz , Karlheinz Meier , Kang L. Wang

Dynamic brain data, teeming with biological and functional insights, are becoming increasingly accessible through advanced measurements, providing a gateway to understanding the inner workings of the brain in living subjects. However, the…

Neurons and Cognition · Quantitative Biology 2025-08-19 Zixia Zhou , Junyan Liu , Wei Emma Wu , Ruogu Fang , Sheng Liu , Qingyue Wei , Rui Yan , Yi Guo , Qian Tao , Yuanyuan Wang , Md Tauhidul Islam , Lei Xing

Normative modeling has recently been introduced as a promising approach for modeling variation of neuroimaging measures across individuals in order to derive biomarkers of psychiatric disorders. Current implementations rely on Gaussian…

Machine Learning · Statistics 2019-04-16 Seyed Mostafa Kia , Andre F. Marquand

Neural ordinary differential equations (NODE) have garnered significant attention for their design of continuous-depth neural networks and the ability to learn data/feature dynamics. However, for high-dimensional systems, estimating…

Machine Learning · Computer Science 2025-10-07 Muhao Guo , Haoran Li , Yang Weng

Despite the widespread application of recurrent neural networks (RNNs) across a variety of tasks, a unified understanding of how RNNs solve these tasks remains elusive. In particular, it is unclear what dynamical patterns arise in trained…

Machine Learning · Computer Science 2022-06-06 Kyle Aitken , Vinay V. Ramasesh , Ankush Garg , Yuan Cao , David Sussillo , Niru Maheswaranathan

The Gaussian kernel and its traditional normalizations (e.g., row-stochastic) are popular approaches for assessing similarities between data points. Yet, they can be inaccurate under high-dimensional noise, especially if the noise magnitude…

Statistics Theory · Mathematics 2023-07-12 Boris Landa , Xiuyuan Cheng

Latent manifolds provide a compact characterization of neural population activity and of shared co-variability across brain areas. Nonetheless, existing statistical tools for extracting neural manifolds face limitations in terms of…

Neurons and Cognition · Quantitative Biology 2022-09-08 Edoardo Balzani , Jean Paul Noel , Pedro Herrero-Vidal , Dora E. Angelaki , Cristina Savin

Learning in Deep Neural Networks (DNN) takes place by minimizing a non-convex high-dimensional loss function, typically by a stochastic gradient descent (SGD) strategy. The learning process is observed to be able to find good minimizers…

Machine Learning · Computer Science 2020-03-12 Carlo Baldassi , Fabrizio Pittorino , Riccardo Zecchina

Boolean network models of molecular regulatory networks have been used successfully in computational systems biology. The Boolean functions that appear in published models tend to have special properties, in particular the property of being…

Dynamical Systems · Mathematics 2024-07-09 Yuan Li , John O. Adeyeye , David Murrugarra , Boris Aguilar , Reinhard Laubenbacher

Comparing neuronal bursting models (NBM) with slow-fast autonomous dynamical systems (S-FADS), it appears that the specific features of a (NBM) do not allow a determination of the analytical slow manifold equation with the singular…

Dynamical Systems · Mathematics 2014-08-19 Jean-Marc Ginoux , Bruno Rossetto

The rapid expansion of Internet of Things (IoT) ecosystems has led to increasingly complex and heterogeneous network topologies. Traditional network monitoring and visualization tools rely on aggregated metrics or static representations,…

Randomly connected neural networks have long served as a theoretical tool for studying collective dynamics in neural populations, yet quantitative comparisons to experiments remain limited. Recent technological advances have made it…

Neurons and Cognition · Quantitative Biology 2026-05-27 Zehui Zhao , Michael J Pasek , Ilya M Nemenman

Understanding the optimization dynamics of neural networks is necessary for closing the gap between theory and practice. Stochastic first-order optimization algorithms are known to efficiently locate favorable minima in deep neural…

Machine Learning · Computer Science 2023-06-22 Charles Guille-Escuret , Hiroki Naganuma , Kilian Fatras , Ioannis Mitliagkas