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The human brain is a complex system requiring both macroscopic and microscopic components for comprehensive understanding. However, mapping nonlinear relationships between these scales remains challenging due to technical limitations and…

Image and Video Processing · Electrical Eng. & Systems 2025-10-28 Sooyoung Kim , Joonwoo Kwon , Junbeom Kwon , Jungyoun Janice Min , Sangyoon Bae , Yuewei Lin , Shinjae Yoo , Jiook Cha

Mental and cognitive representations are believed to reside on low-dimensional, non-linear manifolds embedded within high-dimensional brain activity. Uncovering these manifolds is key to understanding individual differences in brain…

Machine Learning · Computer Science 2025-05-02 Eloy Geenjaar , Vince Calhoun

In the fields of brain-computer interaction and cognitive neuroscience, effective decoding of auditory signals from task-based functional magnetic resonance imaging (fMRI) is key to understanding how the brain processes complex auditory…

Neurons and Cognition · Quantitative Biology 2024-06-05 Wanli Ma , Xuegang Tang , Jin Gu , Ying Wang , Yuling Xia

Music is a universal phenomenon that profoundly influences human experiences across cultures. This study investigates whether music can be decoded from human brain activity measured with functional MRI (fMRI) during its perception.…

Neurons and Cognition · Quantitative Biology 2024-06-25 Matteo Ferrante , Matteo Ciferri , Nicola Toschi

We present a unified deep learning framework for the recognition of user identity and the recognition of imagined actions, based on electroencephalography (EEG) signals, for application as a brain-computer interface. Our solution exploits a…

Human-Computer Interaction · Computer Science 2023-05-03 Marco Buzzelli , Simone Bianco , Paolo Napoletano

Unveiling visual semantics from neural signals such as EEG, MEG, and fMRI remains a fundamental challenge due to subject variability and the entangled nature of visual features. Existing approaches primarily align neural activity directly…

Computer Vision and Pattern Recognition · Computer Science 2025-11-07 Zehui Feng , Chenqi Zhang , Mingru Wang , Minuo Wei , Shiwei Cheng , Cuntai Guan , Ting Han

Brain-computer interface (BCI) technology enables direct communication between the brain and external devices through electroencephalography (EEG) signals. However, existing decoding models often mix common and personalized components,…

Neurons and Cognition · Quantitative Biology 2025-11-21 Xiaoyuan Li , Xinru Xue , Bohan Zhang , Ye Sun , Shoushuo Xi , Gang Liu

Functional magnetic resonance imaging (fMRI) data is characterized by its complexity and high--dimensionality, encompassing signals from various regions of interests (ROIs) that exhibit intricate correlations. Analyzing fMRI data directly…

Applications · Statistics 2024-01-18 Yeseul Jeon , Jeong-Jae Kim , SuMin Yu , Junggu Choi , Sanghoon Han

Decoding visual stimuli from neural population activity is crucial for understanding the brain and for applications in brain-machine interfaces. However, such biological data is often scarce, particularly in primates or humans, where…

Machine Learning · Computer Science 2025-10-24 Jan Sobotka , Luca Baroni , Ján Antolík

In this study, we proposed and validated a multi-atlas guided 3D fully convolutional network (FCN) ensemble model (M-FCN) for segmenting brain regions of interest (ROIs) from structural magnetic resonance images (MRIs). One major limitation…

Computer Vision and Pattern Recognition · Computer Science 2023-08-11 Jiong Wu , Xiaoying Tang

Aggregating multi-site brain MRI data can enhance deep learning model training, but also introduces non-biological heterogeneity caused by site-specific variations (e.g., differences in scanner vendors, acquisition parameters, and imaging…

Computer Vision and Pattern Recognition · Computer Science 2026-01-14 Mengqi Wu , Yongheng Sun , Qianqian Wang , Pew-Thian Yap , Mingxia Liu

Patterns of brain activity are associated with different brain processes and can be used to identify different brain states and make behavioral predictions. However, the relevant features are not readily apparent and accessible. To mine…

Robust decoding and classification of brain patterns measured with electroencephalography (EEG) remains a major challenge for real-world (i.e. outside scientific lab and medical facilities) brain-computer interface (BCI) applications due to…

Neurons and Cognition · Quantitative Biology 2025-12-03 Paul Barbaste , Olivier Oullier , Xavier Vasques

Accurately characterizing higher-order interactions of brain regions and extracting interpretable organizational patterns from Functional Magnetic Resonance Imaging data is crucial for brain disease diagnosis. Current graph-based deep…

Neurons and Cognition · Quantitative Biology 2026-03-16 Dengyi Zhao , Zhiheng Zhou , Guiying Yan , Dongxiao Yu , Xingqin Qi

The decoding of brain neural networks has been an intriguing topic in neuroscience for a well-rounded understanding of different types of brain disorders and cognitive stimuli. Integrating different types of connectivity, e.g., Functional…

Neurons and Cognition · Quantitative Biology 2023-06-09 Han Yi Chiu , Liang Zhao , Anqi Wu

Functional MRI (fMRI) is a powerful technique that has allowed us to characterize visual cortex responses to stimuli, yet such experiments are by nature constructed based on a priori hypotheses, limited to the set of images presented to the…

Neurons and Cognition · Quantitative Biology 2021-05-18 Zijin Gu , Keith W. Jamison , Meenakshi Khosla , Emily J. Allen , Yihan Wu , Thomas Naselaris , Kendrick Kay , Mert R. Sabuncu , Amy Kuceyeski

Intracortical brain-computer interfaces (BCIs) can decode speech from neural activity with high accuracy when trained on data pooled across recording sessions. In realistic deployment, however, models must generalize to new sessions without…

Machine Learning · Computer Science 2026-03-20 Zhanqi Zhang , Shun Li , Bernardo L. Sabatini , Mikio Aoi , Gal Mishne

We propose a novel deep neural network architecture to integrate imaging and genetics data, as guided by diagnosis, that provides interpretable biomarkers. Our model consists of an encoder, a decoder and a classifier. The encoder learns a…

Enabling effective brain-computer interfaces requires understanding how the human brain encodes stimuli across modalities such as visual, language (or text), etc. Brain encoding aims at constructing fMRI brain activity given a stimulus.…

Computer Vision and Pattern Recognition · Computer Science 2022-04-19 Subba Reddy Oota , Jashn Arora , Vijay Rowtula , Manish Gupta , Raju S. Bapi

This study introduces a pioneering approach in brain-computer interface (BCI) technology, featuring our novel concept of high-level visual imagery for non-invasive electroencephalography (EEG)-based communication. High-level visual imagery,…

Human-Computer Interaction · Computer Science 2025-11-03 Byoung-Hee Kwon , Minji Lee , Seong-Whan Lee
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