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Brain extraction is a fundamental step for most brain imaging studies. In this paper, we investigate the problem of skull stripping and propose complementary segmentation networks (CompNets) to accurately extract the brain from T1-weighted…

Computer Vision and Pattern Recognition · Computer Science 2018-10-11 Raunak Dey , Yi Hong

Widely used traditional pipelines for subcortical brain segmentation are often inefficient and slow, particularly when processing large datasets. Furthermore, deep learning models face challenges due to the high resolution of MRI images and…

Image and Video Processing · Electrical Eng. & Systems 2024-10-15 Aaron Cao , Zongyu Li , Jordan Jomsky , Andrew F. Laine , Jia Guo

The development of diagnostic models is gaining traction in the field of psychiatric disorders. Recently, machine learning classifiers based on resting-state functional magnetic resonance imaging (rs-fMRI) have been developed to identify…

Machine Learning · Computer Science 2025-10-06 Tianzheng Hu , Qiang Li , Shu Liu , Vince D. Calhoun , Guido van Wingen , Shujian Yu

Cross-subject brain-to-visual decoding remains a core challenge in brain-computer interfaces due to severe inter-individual variability that induces systematic subject-specific functional misalignment. To address this issue, we propose…

Computer Vision and Pattern Recognition · Computer Science 2026-05-26 Jiaxiang Liu , Jiawei Du , Xupeng Chen , Guoqi Li , Jiang Cai , Simon Fong , Mingkun Xu

Segmentation has been a major task in neuroimaging. A large number of automated methods have been developed for segmenting healthy and diseased brain tissues. In recent years, deep learning techniques have attracted a lot of attention as a…

Image and Video Processing · Electrical Eng. & Systems 2019-07-05 Jimit Doshi , Guray Erus , Mohamad Habes , Christos Davatzikos

We introduce "PatchMorph," an new stochastic deep learning algorithm tailored for unsupervised 3D brain image registration. Unlike other methods, our method uses compact patches of a constant small size to derive solutions that can combine…

Computer Vision and Pattern Recognition · Computer Science 2024-10-28 Henrik Skibbe , Michal Byra , Akiya Watakabe , Tetsuo Yamamori , Marco Reisert

Skull-stripping separates the skull region of the head from the soft brain tissues. In many cases of brain image analysis, this is an essential preprocessing step in order to improve the final result. This is true for both registration and…

Computer Vision and Pattern Recognition · Computer Science 2012-04-03 Stefan Bauer , Lutz-P. Nolte , Mauricio Reyes

Machine learning applications that are implemented with spike-based computation model, e.g., Spiking Neural Network (SNN), have a great potential to lower the energy consumption when they are executed on a neuromorphic hardware. However,…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-05-13 Shihao Song , Adarsha Balaji , Anup Das , Nagarajan Kandasamy , James Shackleford

Objectives: Present a novel deep learning-based skull stripping algorithm for magnetic resonance imaging (MRI) that works directly in the information rich k-space. Materials and Methods: Using two datasets from different institutions with a…

Image and Video Processing · Electrical Eng. & Systems 2023-07-10 Moritz Rempe , Florian Mentzel , Kelsey L. Pomykala , Johannes Haubold , Felix Nensa , Kevin Kröninger , Jan Egger , Jens Kleesiek

Brain extraction and removal of skull artifacts from magnetic resonance images (MRI) is an important preprocessing step in neuroimaging analysis. There are many tools developed to handle human fMRI images, which could involve manual steps…

Image and Video Processing · Electrical Eng. & Systems 2024-01-11 Dwith Chenna , Suyash Bhogawar

Traditional neuroimage analysis pipelines involve computationally intensive, time-consuming optimization steps, and thus, do not scale well to large cohort studies with thousands or tens of thousands of individuals. In this work we propose…

Image and Video Processing · Electrical Eng. & Systems 2020-06-11 Leonie Henschel , Sailesh Conjeti , Santiago Estrada , Kersten Diers , Bruce Fischl , Martin Reuter

Due to their black-box and data-hungry nature, deep learning techniques are not yet widely adopted for real-world applications in critical domains, like healthcare and justice. This paper presents Memory Wrap, a plug-and-play extension to…

Machine Learning · Computer Science 2023-10-30 Biagio La Rosa , Roberto Capobianco , Daniele Nardi

Accurate polyp segmentation in colonoscopy is essential for early colorectal cancer detection, yet real-world clinical environments pose persistent challenges such as motion blur, specular reflections, and illumination instability. Most…

Computer Vision and Pattern Recognition · Computer Science 2026-05-19 Zhuoyu Wu , Wenhui Ou , Lexi Zhang , Pei-Sze Tan , Dongjun Wu , Junhe Zhao , Wenqi Fang , Raphaël C. -W. Phan

Segmentation of brain magnetic resonance images (MRI) is crucial for the analysis of the human brain and diagnosis of various brain disorders. The drawbacks of time-consuming and error-prone manual delineation procedures are aimed to be…

Computer Vision and Pattern Recognition · Computer Science 2022-05-20 Can Taylan Sari , Sila Kurugol , Onur Afacan , Simon K. Warfield

State-of-the-art brain tumor segmentation is based on deep learning models applied to multi-modal MRIs. Currently, these models are trained on images after a preprocessing stage that involves registration, interpolation, brain extraction…

Image and Video Processing · Electrical Eng. & Systems 2022-12-29 Bruno Machado Pacheco , Guilherme de Souza e Cassia , Danilo Silva

Brain extraction in magnetic resonance imaging (MRI) data is an important segmentation step in many neuroimaging preprocessing pipelines. Image segmentation is one of the research fields in which deep learning had the biggest impact in…

Image and Video Processing · Electrical Eng. & Systems 2023-08-15 Lukas Fisch , Stefan Zumdick , Carlotta Barkhau , Daniel Emden , Jan Ernsting , Ramona Leenings , Kelvin Sarink , Nils R. Winter , Benjamin Risse , Udo Dannlowski , Tim Hahn

Transparent objects are a common part of everyday life, yet they possess unique visual properties that make them incredibly difficult for standard 3D sensors to produce accurate depth estimates for. In many cases, they often appear as noisy…

Computer Vision and Pattern Recognition · Computer Science 2019-10-16 Shreeyak S. Sajjan , Matthew Moore , Mike Pan , Ganesh Nagaraja , Johnny Lee , Andy Zeng , Shuran Song

Medical images used in clinical practice are heterogeneous and not the same quality as scans studied in academic research. Preprocessing breaks down in extreme cases when anatomy, artifacts, or imaging parameters are unusual or protocols…

Image and Video Processing · Electrical Eng. & Systems 2022-08-31 Mostafa Mehdipour Ghazi , Mads Nielsen

Recent advancements in robotic grasping have led to its integration as a core module in many manipulation systems. For instance, language-driven semantic segmentation enables the grasping of any designated object or object part. However,…

Robotics · Computer Science 2025-07-09 Yun Du , Mengao Zhao , Tianwei Lin , Yiwei Jin , Chaodong Huang , Zhizhong Su

Accurate and efficient brain tumor segmentation remains a critical challenge in neuroimaging due to the heterogeneous nature of tumor subregions and the high computational cost of volumetric inference. In this paper, we propose…

Computer Vision and Pattern Recognition · Computer Science 2025-08-05 Fatemeh Ziaeetabar