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Semantic medical image segmentation using deep learning has recently achieved high accuracy, making it appealing to clinical problems such as radiation therapy. However, the lack of high-quality semantically labelled data remains a…

Image and Video Processing · Electrical Eng. & Systems 2023-03-13 Wei Dai , Siyu Liu , Craig B. Engstrom , Shekhar S. Chandra

Spatial Transcriptomics (ST) is a technology that measures gene expression profiles within tissue sections while retaining spatial context. It reveals localized gene expression patterns and tissue heterogeneity, both of which are essential…

Quantitative Methods · Quantitative Biology 2026-03-24 Wei Zhang , Jiajun Chu , Xinci Liu , Chen Tong , Xinyue Li

Semantic segmentation is a fundamental task in medical image analysis, aiding medical decision-making by helping radiologists distinguish objects in an image. Research in this field has been driven by deep learning applications, which have…

Computer Vision and Pattern Recognition · Computer Science 2025-12-18 Luca Bergamin , Giovanna Maria Dimitri , Fabio Aiolli

Spatial transcriptomics has revolutionized tissue analysis by simultaneously mapping gene expression, spatial topography, and histological context across consecutive tissue sections, enabling systematic investigation of spatial…

Applications · Statistics 2025-10-24 Meng Zhou , Shuangge Ma , Mengyun Wu

In recent years, there has been a rapid development of spatio-temporal prediction techniques in response to the increasing demands of traffic management and travel planning. While advanced end-to-end models have achieved notable success in…

Machine Learning · Computer Science 2023-11-09 Zhonghang Li , Lianghao Xia , Yong Xu , Chao Huang

Simulating interactions between deformable bodies is vital in fields like material science, mechanical design, and robotics. While learning-based methods with Graph Neural Networks (GNNs) are effective at solving complex physical systems,…

Machine Learning · Computer Science 2025-07-21 Hao Wang , Yu Liu , Daniel Biggs , Haoru Wang , Jiandong Yu , Ping Huang

Modeling semantic information is helpful for scene text recognition. In this work, we propose to model semantic and visual information jointly with a Visual-Semantic Transformer (VST). The VST first explicitly extracts primary semantic…

Computer Vision and Pattern Recognition · Computer Science 2021-12-03 Xin Tang , Yongquan Lai , Ying Liu , Yuanyuan Fu , Rui Fang

We study image segmentation in the biological domain, particularly trait segmentation from specimen images (e.g., butterfly wing stripes, beetle elytra). This fine-grained task is crucial for understanding the biology of organisms, but it…

In this paper, we lay out a vision for analysing semantic trajectory traces and generating synthetic semantic trajectory data (SSTs) using generative language model. Leveraging the advancements in deep learning, as evident by progress in…

Computation and Language · Computer Science 2023-06-27 Shreya Ghosh , Saptarshi Sengupta , Prasenjit Mitra

Spatiotemporal graph represents a crucial data structure where the nodes and edges are embedded in a geometric space and can evolve dynamically over time. Nowadays, spatiotemporal graph data is becoming increasingly popular and important,…

Machine Learning · Computer Science 2022-03-02 Yuanqi Du , Xiaojie Guo , Hengning Cao , Yanfang Ye , Liang Zhao

The success of graph neural networks on graph-based web mining highly relies on abundant human-annotated data, which is laborious to obtain in practice. When only few labeled nodes are available, how to improve their robustness is a key to…

Machine Learning · Computer Science 2022-12-13 Kaize Ding , Elnaz Nouri , Guoqing Zheng , Huan Liu , Ryen White

Modern histopathological image analysis relies on the segmentation of cell structures to derive quantitative metrics required in biomedical research and clinical diagnostics. State-of-the-art deep learning approaches predominantly apply…

Image and Video Processing · Electrical Eng. & Systems 2022-01-12 Yoav Alon , Huiyu Zhou

Semantic typing aims at classifying tokens or spans of interest in a textual context into semantic categories such as relations, entity types, and event types. The inferred labels of semantic categories meaningfully interpret how machines…

Computation and Language · Computer Science 2022-05-05 James Y. Huang , Bangzheng Li , Jiashu Xu , Muhao Chen

Spatio-temporal graph neural networks (STGNN) have become the most popular solution to traffic forecasting. While successful, they rely on the message passing scheme of GNNs to establish spatial dependencies between nodes, and thus…

Machine Learning · Computer Science 2023-01-31 Xu Liu , Yuxuan Liang , Chao Huang , Hengchang Hu , Yushi Cao , Bryan Hooi , Roger Zimmermann

In this paper, we develop a deep learning based semantic communication system for speech transmission, named DeepSC-ST. We take the speech recognition and speech synthesis as the transmission tasks of the communication system, respectively.…

Audio and Speech Processing · Electrical Eng. & Systems 2023-04-03 Zhenzi Weng , Zhijin Qin , Xiaoming Tao , Chengkang Pan , Guangyi Liu , Geoffrey Ye Li

It is very useful to integrate human knowledge and experience into traditional neural networks for faster learning speed, fewer training samples and better interpretability. However, due to the obscured and indescribable black box model of…

Machine Learning · Computer Science 2018-10-02 Guangming Shi , Zhongqiang Zhang , Dahua Gao , Xuemei Xie , Yihao Feng , Xinrui Ma , Danhua Liu

Breast tumor segmentation provides accurate tumor boundary, and serves as a key step toward further cancer quantification. Although deep learning-based approaches have been proposed and achieved promising results, existing approaches have…

Image and Video Processing · Electrical Eng. & Systems 2020-02-05 Bryar Shareef , Min Xian , Aleksandar Vakanski

Localization is an essential task for mobile autonomous robotic systems that want to use pre-existing maps or create new ones in the context of SLAM. Today, many robotic platforms are equipped with high-accuracy 3D LiDAR sensors, which…

Classification of whole-brain functional connectivity MRI data with convolutional neural networks (CNNs) has shown promise, but the complexity of these models impedes understanding of which aspects of brain activity contribute to…

Neurons and Cognition · Quantitative Biology 2020-05-28 Matthew Leming , John Suckling

Xenium, a new spatial transcriptomics platform, enables subcellular-resolution profiling of complex tumor tissues. Despite the rich morphological information in histology images, extracting robust cell-level features and integrating them…

Computer Vision and Pattern Recognition · Computer Science 2025-08-15 Paul H. Acosta , Pingjun Chen , Simon P. Castillo , Maria Esther Salvatierra , Yinyin Yuan , Xiaoxi Pan