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The rapid progress of Large Language Models (LLMs) has given rise to a new category of autonomous AI systems, referred to as Deep Research (DR) agents. These agents are designed to tackle complex, multi-turn informational research tasks by…

Artificial Intelligence · Computer Science 2025-09-04 Yuxuan Huang , Yihang Chen , Haozheng Zhang , Kang Li , Huichi Zhou , Meng Fang , Linyi Yang , Xiaoguang Li , Lifeng Shang , Songcen Xu , Jianye Hao , Kun Shao , Jun Wang

Coding agents represent a new paradigm in automated software engineering, combining the reasoning capabilities of Large Language Models (LLMs) with tool-augmented interaction loops. However, coding agents still have severe limitations.…

Software Engineering · Computer Science 2026-04-06 Tural Mehtiyev , Wesley Assunção

This paper introduces a novel Deep Researcher architecture designed to generate detailed research reports on complex PhD level topics by addressing the inherent limitations of the Parallel Scaling paradigm. Our system utilizes two key…

Artificial Intelligence · Computer Science 2026-01-29 Saurav Prateek

Code localization is a fundamental challenge in repository-level software engineering tasks such as bug fixing. While existing methods equip language agents with comprehensive tools/interfaces to fetch information from the repository, they…

Software Engineering · Computer Science 2026-02-10 Boshi Wang , Weijian Xu , Yunsheng Li , Mei Gao , Yujia Xie , Huan Sun , Dongdong Chen

The SZZ algorithm is the dominant technique for identifying bug-inducing commits and underpins many software engineering tasks, such as defect prediction and vulnerability analysis. Despite numerous variants, including recent LLM-based…

Software Engineering · Computer Science 2026-04-06 Yunbo Lyu , Jieke Shi , Hong Jin Kang , Ratnadira Widyasari , Junda He , Yuqing Niu , Chengran Yang , Junkai Chen , Zhou Yang , Julia Lawall , David Lo

In this paper, we present a challenging code reasoning task: vulnerability detection. Large Language Models (LLMs) have shown promising results in natural-language and math reasoning, but state-of-the-art (SOTA) models reported only 54.5%…

Software Engineering · Computer Science 2025-01-09 Benjamin Steenhoek , Md Mahbubur Rahman , Monoshi Kumar Roy , Mirza Sanjida Alam , Hengbo Tong , Swarna Das , Earl T. Barr , Wei Le

Large language models (LLMs) have shown remarkable ability to generate code, yet their outputs often violate syntactic or semantic constraints when guided only through natural language prompts. We introduce TreeCoder, the most general and…

Machine Learning · Computer Science 2026-04-27 Henrijs Princis , Arindam Sharma , Cristina David

Current AI-powered code assistance tools often struggle with poorly-defined problem statements that lack sufficient task context and requirements specification. Recent analysis of software engineering agents reveals that failures on such…

Computation and Language · Computer Science 2026-04-13 Manan Suri , Xiangci Li , Mehdi Shojaie , Songyang Han , Chao-Chun Hsu , Shweta Garg , Aniket Anand Deshmukh , Varun Kumar

Understanding large-scale, complex software systems is a major challenge for developers, who spend a significant portion of their time on program comprehension. Traditional tools such as static visualizations and reverse engineering…

Software Engineering · Computer Science 2025-08-11 Yoseph Berhanu Alebachew

Many software development tasks, such as implementing features and fixing bugs, begin with developers posing questions about a codebase. However, answering questions about codebases that span millions of lines of code across thousands of…

Software Engineering · Computer Science 2026-05-12 Amirmohammad Nazari , Sadra Sabouri , Wang Bill Zhu , Robin Jia , Souti Chattopadhyay , Mukund Raghothaman

The development of AI-assisted chemical synthesis tools requires comprehensive datasets covering diverse reaction types, yet current high-throughput experimental (HTE) approaches are expensive and limited in scope. Chemical literature…

Information Retrieval · Computer Science 2025-07-01 Kexin Chen , Yuyang Du , Junyou Li , Hanqun Cao , Menghao Guo , Xilin Dang , Lanqing Li , Jiezhong Qiu , Pheng Ann Heng , Guangyong Chen

$ $Large Language Models (LLMs) are being increasingly utilized in various applications, with code generations being a notable example. While previous research has shown that LLMs have the capability to generate both secure and insecure…

Large Language Model (LLM)-based search agents have shown remarkable capabilities in solving complex tasks by dynamically decomposing problems and addressing them through interleaved reasoning and retrieval. However, this interleaved…

Artificial Intelligence · Computer Science 2025-05-20 Tiannuo Yang , Zebin Yao , Bowen Jin , Lixiao Cui , Yusen Li , Gang Wang , Xiaoguang Liu

Modern software systems like the Linux kernel are among the world's largest and most intricate codebases, continually evolving with new features and increasing complexity. Understanding these systems poses significant challenges due to…

Software Engineering · Computer Science 2024-10-04 Yusheng Zheng , Yiwei Yang , Haoqin Tu , Yuxi Huang

Tool use has turned large language models (LLMs) into powerful agents that can perform complex multi-step tasks by dynamically utilising external software components. However, these tools must be implemented in advance by human developers,…

Computation and Language · Computer Science 2025-06-02 Georg Wölflein , Dyke Ferber , Daniel Truhn , Ognjen Arandjelović , Jakob Nikolas Kather

Large Language Models (LLMs) have recently emerged as capable coding assistants that operate over large codebases through either agentic exploration or full-context generation. Existing benchmarks capture a broad range of coding…

Software Engineering · Computer Science 2026-03-30 Jiseung Hong , Benjamin G. Ascoli , Jinho D. Choi

Large language models (LLMs) have achieved remarkable progress in automatic code generation, yet their ability to produce high-performance code remains limited--a critical requirement in real-world software systems. We argue that current…

Software Engineering · Computer Science 2026-05-11 Jiuding Yang , Shengyao Lu , Hongxuan Liu , Shayan Shirahmad Gale Bagi , Zahra Fazel , Tomasz Czajkowski , Di Niu

Code linters play a crucial role in developing high-quality software systems by detecting potential problems (e.g., memory leaks) in the source code of systems. Despite their benefits, code linters are often language-specific, focused on…

Software Engineering · Computer Science 2024-07-24 Darren Holden , Nafiseh Kahani

The automated program repair field has attracted substantial interest over the years, but despite significant research efforts, creating a system that works well for complex semantic bugs such as security vulnerabilities has proven…

Cryptography and Security · Computer Science 2024-02-26 Berkay Berabi , Alexey Gronskiy , Veselin Raychev , Gishor Sivanrupan , Victor Chibotaru , Martin Vechev

Repository-level coding agents must first localize the files and symbols relevant to a task; failures at this stage can cascade across downstream objectives ranging from patch generation to test writing and codebase question answering.…

Information Retrieval · Computer Science 2026-05-19 Yuntong Hu , Tongli Su , Liang Zhao , Bowen Zhu , Hasibul Haque
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