English
Related papers

Related papers: Breaking Bad Molecules: Are MLLMs Ready for Struct…

200 papers

The emergence of large language models (LLMs) has sparked enormous interest due to their potential application across a range of educational tasks. For example, recent work in programming education has used LLMs to generate learning…

Software Engineering · Computer Science 2024-05-10 Charles Koutcheme , Nicola Dainese , Sami Sarsa , Juho Leinonen , Arto Hellas , Paul Denny

Tool learning, which enables large language models (LLMs) to utilize external tools effectively, has garnered increasing attention for its potential to revolutionize productivity across industries. Despite rapid development in tool…

Artificial Intelligence · Computer Science 2025-05-20 Haotian Chen , Zijun Song , Boye Niu , Ke Zhang , Litu Ou , Yaxi Lu , Zhong Zhang , Xin Cong , Yankai Lin , Zhiyuan Liu , Maosong Sun

Recovering the structure of causal graphical models from observational data is an essential yet challenging task for causal discovery in scientific scenarios. Domain-specific causal discovery usually relies on expert validation or prior…

Artificial Intelligence · Computer Science 2025-08-27 Taiyu Ban , Lyuzhou Chen , Derui Lyu , Xiangyu Wang , Qinrui Zhu , Qiang Tu , Huanhuan Chen

Logical vulnerabilities in software stem from flaws in program logic rather than memory safety, which can lead to critical security failures. Although existing automated program repair techniques primarily focus on repairing memory…

A molecule's properties are fundamentally determined by its composition and structure encoded in its molecular graph. Thus, reasoning about molecular properties requires the ability to parse and understand the molecular graph. Large…

Machine Learning · Computer Science 2026-01-22 Christoph Bartmann , Johannes Schimunek , Mykyta Ielanskyi , Philipp Seidl , Günter Klambauer , Sohvi Luukkonen

Large language models (LLMs) show significant potential in healthcare, prompting numerous benchmarks to evaluate their capabilities. However, concerns persist regarding the reliability of these benchmarks, which often lack clinical…

Computation and Language · Computer Science 2026-04-30 Wenting Chen , Guo Yu , Yiu-Fai Cheung , Meidan Ding , Jie Liu , Zizhan Ma , Wenxuan Wang , Linlin Shen

Multimodal large language models (MLLMs), which integrate language and visual cues for problem-solving, are crucial for advancing artificial general intelligence (AGI). However, current benchmarks for measuring the intelligence of MLLMs…

Multimodal large language models (MLLMs) are widely used in vision-language reasoning tasks. However, their vulnerability to adversarial prompts remains a serious concern, as safety mechanisms often fail to prevent the generation of harmful…

Computer Vision and Pattern Recognition · Computer Science 2025-08-14 Zuoou Li , Weitong Zhang , Jingyuan Wang , Shuyuan Zhang , Wenjia Bai , Bernhard Kainz , Mengyun Qiao

Applications of machine learning in chemistry are often limited by the scarcity and expense of labeled data, restricting traditional supervised methods. In this work, we introduce a framework for molecular reasoning using general-purpose…

Millions of individuals' well-being are challenged by the harms of substance use. Harm reduction as a public health strategy is designed to improve their health outcomes and reduce safety risks. Some large language models (LLMs) have…

Computation and Language · Computer Science 2025-07-30 Kaixuan Wang , Chenxin Diao , Jason T. Jacques , Zhongliang Guo , Shuai Zhao

In the field of industrial inspection, Multimodal Large Language Models (MLLMs) have a high potential to renew the paradigms in practical applications due to their robust language capabilities and generalization abilities. However, despite…

Artificial Intelligence · Computer Science 2025-02-24 Xi Jiang , Jian Li , Hanqiu Deng , Yong Liu , Bin-Bin Gao , Yifeng Zhou , Jialin Li , Chengjie Wang , Feng Zheng

We present a modular framework powered by large language models (LLMs) that automates and streamlines key tasks across the early-stage computational drug discovery pipeline. By combining LLM reasoning with domain-specific tools, the…

State-of-the-art large language models (LLMs) have demonstrated impressive code generation capabilities but struggle with real-world software engineering tasks, such as revising source code to address code reviews, hindering their practical…

Software Engineering · Computer Science 2025-06-03 Hong Yi Lin , Chunhua Liu , Haoyu Gao , Patanamon Thongtanunam , Christoph Treude

The critique capacity of Large Language Models (LLMs) is essential for reasoning abilities, which can provide necessary suggestions (e.g., detailed analysis and constructive feedback). Therefore, how to evaluate the critique capacity of…

Large Language Models (LLMs) ) have demonstrated promise in boosting productivity across AI-powered tools, yet existing benchmarks like Massive Multitask Language Understanding (MMLU) inadequately assess enterprise-specific task…

Artificial Intelligence · Computer Science 2025-06-26 Liya Wang , David Yi , Damien Jose , John Passarelli , James Gao , Jordan Leventis , Kang Li

The pursuit of leaderboard rankings in Large Language Models (LLMs) has created a fundamental paradox: models excel at standardized tests while failing to demonstrate genuine language understanding and adaptability. Our systematic analysis…

Computation and Language · Computer Science 2024-12-06 Sourav Banerjee , Ayushi Agarwal , Eishkaran Singh

Recently, pre-trained large language models (LLMs) have shown impressive abilities in generating codes from natural language descriptions, repairing buggy codes, translating codes between languages, and retrieving relevant code segments.…

Computation and Language · Computer Science 2023-11-07 Mohammad Abdullah Matin Khan , M Saiful Bari , Xuan Long Do , Weishi Wang , Md Rizwan Parvez , Shafiq Joty

Retrosynthesis, the process of breaking down a target molecule into simpler precursors through a series of valid reactions, stands at the core of organic chemistry and drug development. Although recent machine learning (ML) research has…

Artificial Intelligence · Computer Science 2026-05-12 Haorui Wang , Jeff Guo , Lingkai Kong , Rampi Ramprasad , Philippe Schwaller , Yuanqi Du , Chao Zhang

Multimodal Large Language Model (MLLM) relies on the powerful LLM to perform multimodal tasks, showing amazing emergent abilities in recent studies, such as writing poems based on an image. However, it is difficult for these case studies to…

Computer Vision and Pattern Recognition · Computer Science 2025-10-27 Chaoyou Fu , Peixian Chen , Yunhang Shen , Yulei Qin , Mengdan Zhang , Xu Lin , Jinrui Yang , Xiawu Zheng , Ke Li , Xing Sun , Yunsheng Wu , Rongrong Ji , Caifeng Shan , Ran He

Large Language Models (LLMs) transform artificial intelligence, driving advancements in natural language understanding, text generation, and autonomous systems. The increasing complexity of their development and deployment introduces…

Cryptography and Security · Computer Science 2025-02-19 Shenao Wang , Yanjie Zhao , Zhao Liu , Quanchen Zou , Haoyu Wang