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The newly emerged transformer technology has a tremendous impact on NLP research. In the general English domain, transformer-based models have achieved state-of-the-art performances on various NLP benchmarks. In the clinical domain,…

Computation and Language · Computer Science 2021-08-17 Xi Yang , Zehao Yu , Yi Guo , Jiang Bian , Yonghui Wu

The relation extraction (RE) in complex scenarios faces challenges such as diverse relation types and ambiguous relations between entities within a single sentence, leading to the poor performance of pure "text-in, text-out" language models…

Computation and Language · Computer Science 2024-09-04 Yuchen Shi , Guochao Jiang , Tian Qiu , Deqing Yang

Biomedical triple extraction systems aim to automatically extract biomedical entities and relations between entities. The exploration of applying large language models (LLM) to triple extraction is still relatively unexplored. In this work,…

Computation and Language · Computer Science 2024-04-30 Mingchen Li , Huixue Zhou , Rui Zhang

We introduce an explainability method for biomedical hypothesis generation systems, built on top of the novel Hypothesis Generation Context Retriever framework. Our approach combines semantic graph-based retrieval and relevant…

Information Retrieval · Computer Science 2025-11-11 Ilya Tyagin , Saeideh Valipour , Aliaksandra Sikirzhytskaya , Michael Shtutman , Ilya Safro

Abstracts derived from biomedical literature possess distinct domain-specific characteristics, including specialised writing styles and biomedical terminologies, which necessitate a deep understanding of the related literature. As a result,…

Computation and Language · Computer Science 2023-10-25 Chen Tang , Shun Wang , Tomas Goldsack , Chenghua Lin

Automatic Term Extraction (ATE) identifies domain-specific expressions that are crucial for downstream tasks such as machine translation and information retrieval. Although large language models (LLMs) have significantly advanced various…

Computation and Language · Computer Science 2025-06-27 Yongchan Chun , Minhyuk Kim , Dongjun Kim , Chanjun Park , Heuiseok Lim

Recently, large language models (LLMs) have been successful in relational extraction (RE) tasks, especially in the few-shot learning. An important problem in the field of RE is long-tailed data, while not much attention is paid to this…

Computation and Language · Computer Science 2024-12-23 Xuemei Tang , Jun Wang

Sentential relation extraction (RE) is an important task in natural language processing (NLP). In this paper we propose to do sentential RE with dynamic routing in capsules. We first show that the proposed approach outperform state of the…

Computation and Language · Computer Science 2025-09-03 Ramazan Ali Bahrami , Ramin Yahyapour

Document-level relation extraction aims to categorize the association between any two entities within a document. We find that previous methods for document-level relation extraction are ineffective in exploiting the full potential of large…

Computation and Language · Computer Science 2024-06-11 Chufan Gao , Xuan Wang , Jimeng Sun

Given comparative text, comparative relation extraction aims to extract two targets (\eg two cameras) in comparison and the aspect they are compared for (\eg image quality). The extracted comparative relations form the basis of further…

Computation and Language · Computer Science 2024-06-28 Yequan Wang , Hengran Zhang , Aixin Sun , Xuying Meng

Relation extraction (RE) is a fundamental task in natural language processing, aiming to identify relations between target entities in text. While many RE methods are designed for a single sentence or document, cross-document RE has emerged…

Computation and Language · Computer Science 2024-06-03 Byeonghu Na , Suhyeon Jo , Yeongmin Kim , Il-Chul Moon

Existing summarization systems mostly generate summaries purely relying on the content of the source document. However, even for humans, we usually need some references or exemplars to help us fully understand the source document and write…

Computation and Language · Computer Science 2021-12-14 Chenxin An , Ming Zhong , Zhichao Geng , Jianqiang Yang , Xipeng Qiu

Retrieval-augmented generation (RAG) improves the response quality of large language models (LLMs) by retrieving knowledge from external databases. Typical RAG approaches split the text database into chunks, organizing them in a flat…

Computation and Language · Computer Science 2025-11-18 Boyu Chen , Zirui Guo , Zidan Yang , Yuluo Chen , Junze Chen , Zhenghao Liu , Chuan Shi , Cheng Yang

Low-resource Relation Extraction (LRE) aims to extract relation facts from limited labeled corpora when human annotation is scarce. Existing works either utilize self-training scheme to generate pseudo labels that will cause the gradual…

Computation and Language · Computer Science 2021-09-15 Xuming Hu , Chenwei Zhang , Yawen Yang , Xiaohe Li , Li Lin , Lijie Wen , Philip S. Yu

This work proposes a novel approach to enhancing annotated bibliography generation through Large Language Model (LLM) ensembles. In particular, multiple LLMs in different roles -- controllable text generation, evaluation, and summarization…

Computation and Language · Computer Science 2024-12-31 Sergio Bermejo

Biomedical event extraction is an information extraction task to obtain events from biomedical text, whose targets include the type, the trigger, and the respective arguments involved in an event. Traditional biomedical event extraction…

Computation and Language · Computer Science 2024-03-20 Pengchao Wu , Xuefeng Li , Jinghang Gu , Longhua Qian , Guodong Zhou

Relation Extraction (RE) remains a challenging task, especially when considering realistic out-of-domain evaluations. One of the main reasons for this is the limited training size of current RE datasets: obtaining high-quality (manually…

Computation and Language · Computer Science 2023-05-19 Elisa Bassignana , Filip Ginter , Sampo Pyysalo , Rob van der Goot , Barbara Plank

Word frequency-based methods for extractive summarization are easy to implement and yield reasonable results across languages. However, they have significant limitations - they ignore the role of context, they offer uneven coverage of…

Computation and Language · Computer Science 2018-10-25 Archit Sakhadeo , Nisheeth Srivastava

There are hundreds of methods for analysis of data obtained in mRNA-sequencing. The most of them are focused on small number of genes. In this study, we propose an approach that reduces the analysis of several thousand genes to analysis of…

Computation and Language · Computer Science 2023-08-28 Vladislav Dordiuk , Ekaterina Demicheva , Fernando Polanco Espino , Konstantin Ushenin

Existing research studies on cross-sentence relation extraction in long-form multi-party conversations aim to improve relation extraction without considering the explainability of such methods. This work addresses that gap by focusing on…

Computation and Language · Computer Science 2022-10-20 Alon Albalak , Varun Embar , Yi-Lin Tuan , Lise Getoor , William Yang Wang