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Temporal graph learning has applications in recommendation systems, traffic forecasting, and social network analysis. Although multiple architectures have been introduced, progress in positional encoding for temporal graphs remains limited.…

Machine Learning · Computer Science 2025-06-03 Yaniv Galron , Fabrizio Frasca , Haggai Maron , Eran Treister , Moshe Eliasof

Traffic forecasting is a key task in the field of Intelligent Transportation Systems. Recent research on traffic forecasting has mainly focused on combining graph neural networks (GNNs) with other models. However, GNNs only consider…

Artificial Intelligence · Computer Science 2026-04-21 Xiao Wang , Shun-Ren Yang

Recent advancements in transformer-based models have greatly improved time series analysis, providing robust solutions for tasks such as forecasting, anomaly detection, and classification. A crucial element of these models is positional…

Machine Learning · Computer Science 2026-05-07 Habib Irani , Vangelis Metsis

Dynamic graphs serve as a generic abstraction and description of the evolutionary behaviors of various complex systems (e.g., social networks and communication networks). Temporal link prediction (TLP) is a classic yet challenging inference…

Social and Information Networks · Computer Science 2023-06-30 Meng Qin , Dit-Yan Yeung

Graph neural networks (GNNs) largely rely on the message-passing paradigm, where nodes iteratively aggregate information from their neighbors. Yet, standard message passing neural networks (MPNNs) face well-documented theoretical and…

Machine Learning · Computer Science 2026-05-15 Juan Amboage , Ernst Röell , Patrick Schnider , Bastian Rieck

In this work, we theoretically demonstrate that current graph positional encodings (PEs) are not beneficial and could potentially hurt performance in tasks involving heterophilous graphs, where nodes that are close tend to have different…

Machine Learning · Computer Science 2025-04-30 Michael Ito , Jiong Zhu , Dexiong Chen , Danai Koutra , Jenna Wiens

Unsupervised pre-training on vast amounts of graph data is critical in real-world applications wherein labeled data is limited, such as molecule properties prediction or materials science. Existing approaches pre-train models for specific…

Machine Learning · Computer Science 2024-10-01 Viet Anh Nguyen , Nhat Khang Ngo , Truong Son Hy

Attentional mechanisms are order-invariant. Positional encoding is a crucial component to allow attention-based deep model architectures such as Transformer to address sequences or images where the position of information matters. In this…

Machine Learning · Computer Science 2021-11-10 Yang Li , Si Si , Gang Li , Cho-Jui Hsieh , Samy Bengio

Traffic prediction, an essential component for intelligent transportation systems, endeavours to use historical data to foresee future traffic features at specific locations. Although existing traffic prediction models often emphasize…

Machine Learning · Computer Science 2024-07-09 Chenxi Liu , Sun Yang , Qianxiong Xu , Zhishuai Li , Cheng Long , Ziyue Li , Rui Zhao

Link prediction is a crucial task in many downstream applications of graph machine learning. To this end, Graph Neural Network (GNN) is a widely used technique for link prediction, mainly in transductive settings, where the goal is to…

Machine Learning · Computer Science 2025-03-06 Ahmed E. Samy , Zekarias T. Kefato , Sarunas Girdzijauskas

We propose a novel positional encoding for learning graph on Transformer architecture. Existing approaches either linearize a graph to encode absolute position in the sequence of nodes, or encode relative position with another node using…

Machine Learning · Computer Science 2022-10-17 Wonpyo Park , Woonggi Chang , Donggeon Lee , Juntae Kim , Seung-won Hwang

Transformers rely on both content-based and position-based addressing mechanisms to make predictions, but existing positional encoding techniques often diminish the effectiveness of position-based addressing. Many current methods enforce…

Computation and Language · Computer Science 2025-08-22 Jiajun Zhu , Peihao Wang , Ruisi Cai , Jason D. Lee , Pan Li , Zhangyang Wang

Semantic Tube Prediction (STP) leverages representation geometric to regularize LLM hidden-state trajectories toward locally linear geodesics during fine-tuning, thereby greatly improving data efficiency. The original STP recipe samples…

Machine Learning · Computer Science 2026-04-21 Yidi Yuan

Graph neural networks (GNN) have shown great advantages in many graph-based learning tasks but often fail to predict accurately for a task-based on sets of nodes such as link/motif prediction and so on. Many works have recently proposed to…

Machine Learning · Computer Science 2022-06-24 Haorui Wang , Haoteng Yin , Muhan Zhang , Pan Li

Positional encodings (PEs) are essential for building powerful and expressive graph neural networks and graph transformers, as they effectively capture the relative spatial relationships between nodes. Although extensive research has been…

Machine Learning · Computer Science 2026-03-16 Yinan Huang , Haoyu Wang , Pan Li

Temporal Heterogeneous Networks play a crucial role in capturing the dynamics and heterogeneity inherent in various real-world complex systems, rendering them a noteworthy research avenue for link prediction. However, existing methods fail…

Social and Information Networks · Computer Science 2025-12-12 Yu Tai , Xinglong Wu , Hongwei Yang , Hui He , Duanjing Chen , Yuanming Shao , Weizhe Zhang

Predictive process monitoring is a process mining task aimed at forecasting information about a running process trace, such as the most correct next activity to be executed. In medical domains, predictive process monitoring can provide…

Machine Learning · Computer Science 2026-02-18 Christopher Irwin , Marco Dossena , Giorgio Leonardi , Stefania Montani

Research on link prediction in knowledge graphs has mainly focused on static multi-relational data. In this work we consider temporal knowledge graphs where relations between entities may only hold for a time interval or a specific point in…

Artificial Intelligence · Computer Science 2018-09-11 Alberto García-Durán , Sebastijan Dumančić , Mathias Niepert

Relative positional encoding is widely used in vanilla and linear transformers to represent positional information. However, existing encoding methods of a vanilla transformer are not always directly applicable to a linear transformer,…

Computation and Language · Computer Science 2023-07-19 Zhen Qin , Weixuan Sun , Kaiyue Lu , Hui Deng , Dongxu Li , Xiaodong Han , Yuchao Dai , Lingpeng Kong , Yiran Zhong

Link prediction on graphs has applications spanning from recommender systems to drug discovery. Temporal link prediction (TLP) refers to predicting future links in a temporally evolving graph and adds additional complexity related to the…

Machine Learning · Computer Science 2025-04-18 Ayan Chatterjee , Barbara Ikica , Babak Ravandi , John Palowitch
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