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Large language models (LLMs) have demonstrated broad utility across molecular domains, spanning drug discovery and materials design. Analyzing LLMs' latent representations is crucial for elucidating their underlying mechanisms, improving…

Machine Learning · Computer Science 2026-02-03 Zhuoran Li , Xu Sun , Wanyu Lin , Jiannong Cao

Visual document retrieval has become essential for accessing information in visually rich documents. Existing approaches fall into two camps. Late-interaction retrievers achieve strong quality through fine-grained token-level matching but…

Machine Learning · Computer Science 2026-05-08 Weien Li , Rui Song , Zeyu Li , Haochen Liu , Gonghao Zhang , Difan Jiao , Zhenwei Tang , Bowei He , Haolun Wu , Xue Liu , Ye Yuan

The ability of machine learning models to store input information in hidden layer vector embeddings, analogous to the concept of `memory', is widely employed but not well characterized. We find that language model embeddings typically…

Computation and Language · Computer Science 2026-05-20 Benjamin L. Badger

Current single-cell foundation model benchmarks universally extract final layer embeddings, assuming these represent optimal feature spaces. We systematically evaluate layer-wise representations from scFoundation (100M parameters) and…

Artificial Intelligence · Computer Science 2026-04-17 Vincenzo Yuto Civale , Roberto Semeraro , Andrew David Bagdanov , Alberto Magi

Compressing word embeddings is important for deploying NLP models in memory-constrained settings. However, understanding what makes compressed embeddings perform well on downstream tasks is challenging---existing measures of compression…

Machine Learning · Computer Science 2020-01-16 Avner May , Jian Zhang , Tri Dao , Christopher Ré

Building on recent advances in representation learning for wireless channels, this work investigates the cost-benefit trade-offs of high-dimensional channel embeddings in practical systems. We benchmark multiple wireless representations:…

Signal Processing · Electrical Eng. & Systems 2026-05-05 Murilo Batista , Shirin Salehi , Saeed Mashdour , Paul Zheng , Rodrigo C. de Lamare , Anke Schmeink

Do multilingual embedding models encode a language-general representation of proficiency? We investigate this by training linear and non-linear probes on hidden-state activations from Qwen3-Embedding (0.6B, 4B, 8B) to predict CEFR…

Computation and Language · Computer Science 2026-04-09 Laurits Lyngbaek , Ross Deans Kristensen-McLachlan

The dominance of large decoder-only language models has overshadowed encoder-decoder architectures, despite their fundamental efficiency advantages in sequence processing. For small language models (SLMs) - those with 1 billion parameters…

Computation and Language · Computer Science 2025-01-31 Mohamed Elfeki , Rui Liu , Chad Voegele

By replacing the lens with a thin optical element, lensless imaging enables new applications and solutions beyond those supported by traditional camera design and post-processing, e.g. compact and lightweight form factors and visual…

Computer Vision and Pattern Recognition · Computer Science 2022-06-06 Eric Bezzam , Martin Vetterli , Matthieu Simeoni

Molecular representation is a critical element in our understanding of the physical world and the foundation for modern molecular machine learning. Previous molecular machine learning models have employed strings, fingerprints, global…

Machine Learning · Computer Science 2025-05-28 Daniil A. Boiko , Thiago Reschützegger , Benjamin Sanchez-Lengeling , Samuel M. Blau , Gabe Gomes

Recent results on optimization and generalization properties of neural networks showed that in a simple two-layer network, the alignment of the labels to the eigenvectors of the corresponding Gram matrix determines the convergence of the…

Machine Learning · Computer Science 2023-02-03 Arman Rahbar , Emilio Jorge , Devdatt Dubhashi , Morteza Haghir Chehreghani

We propose an end-to-end learned image data hiding framework that embeds and extracts secrets in the latent representations of a generic neural compressor. By leveraging a perceptual loss function in conjunction with our proposed message…

Cryptography and Security · Computer Science 2023-10-03 Chen-Hsiu Huang , Ja-Ling Wu

Transformer-based document cross-encoder rerankers are a central component of modern information retrieval systems. Despite their success, these models suffer from high computational costs due to processing long query-document sequences at…

Information Retrieval · Computer Science 2026-05-22 Shengyao Zhuang , Zhichao Xu , Ivano Lauriola

Pretrained encoders for mathematical texts have achieved significant improvements on various tasks such as formula classification and information retrieval. Yet they remain limited in representing and capturing student strategies for entire…

Computers and Society · Computer Science 2026-04-13 Siddhartha Pradhan , Ethan Prihar , Erin Ottmar

Rerankers, typically cross-encoders, are computationally intensive but are frequently used because they are widely assumed to outperform cheaper initial IR systems. We challenge this assumption by measuring reranker performance for full…

Information Retrieval · Computer Science 2025-07-14 Mathew Jacob , Erik Lindgren , Matei Zaharia , Michael Carbin , Omar Khattab , Andrew Drozdov

Embedding models are central to dense retrieval, semantic search, and recommendation systems, but their size often makes them impractical to deploy in resource-constrained environments such as browsers or edge devices. While smaller…

Autoencoders are a widespread tool in machine learning to transform high-dimensional data into a lowerdimensional representation which still exhibits the essential characteristics of the input. The encoder provides an embedding from the…

Machine Learning · Computer Science 2021-04-28 Juliane Braunsmann , Marko Rajković , Martin Rumpf , Benedikt Wirth

Neural methods of molecule property prediction require efficient encoding of structure and property relationship to be accurate. Recent work using graph algorithms shows limited generalization in the latent molecule encoding space. We build…

Quantitative Methods · Quantitative Biology 2020-11-26 Prateeth Nayak , Andrew Silberfarb , Ran Chen , Tulay Muezzinoglu , John Byrnes

We propose an end-to-end learned image compression codec wherein the analysis transform is jointly trained with an object classification task. This study affirms that the compressed latent representation can predict human perceptual…

Computer Vision and Pattern Recognition · Computer Science 2024-01-17 Chen-Hsiu Huang , Ja-Ling Wu

When adapting an encoder to a new domain, the standard approach is to continue training with Masked Language Modeling (MLM). We show that temporarily switching to Causal Language Modeling (CLM) followed by a short MLM decay improves…

Computation and Language · Computer Science 2026-05-13 Rian Touchent , Eric de la Clergerie