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Neural network models in neuroscience allow one to study how the connections between neurons shape the activity of neural circuits in the brain. In this chapter, we study Combinatorial Threshold-Linear Networks (CTLNs) in order to…

Neurons and Cognition · Quantitative Biology 2018-04-05 Katherine Morrison , Carina Curto

Sequences of neural activity arise in many brain areas, including cortex, hippocampus, and central pattern generator circuits that underlie rhythmic behaviors like locomotion. While network architectures supporting sequence generation vary…

Neurons and Cognition · Quantitative Biology 2022-08-16 Caitlyn Parmelee , Juliana Londono Alvarez , Carina Curto , Katherine Morrison

Combinatorial threshold-linear networks (CTLNs) are a special class of inhibition-dominated TLNs defined from directed graphs. Like more general TLNs, they display a wide variety of nonlinear dynamics including multistability, limit cycles,…

Neurons and Cognition · Quantitative Biology 2022-08-16 Caitlyn Parmelee , Samantha Moore , Katherine Morrison , Carina Curto

Combinatorial threshold-linear networks (CTLNs) are a special class of recurrent neural networks whose dynamics are tightly controlled by an underlying directed graph. Recurrent networks have long been used as models for associative memory…

Neurons and Cognition · Quantitative Biology 2023-11-21 Carina Curto , Jesse Geneson , Katherine Morrison

Threshold-linear networks consist of simple units interacting in the presence of a threshold nonlinearity. Competitive threshold-linear networks have long been known to exhibit multistability, where the activity of the network settles into…

Neurons and Cognition · Quantitative Biology 2023-10-17 Katherine Morrison , Anda Degeratu , Vladimir Itskov , Carina Curto

Biological neural networks can operate in qualitatively distinct dynamical regimes, and transitions between these regimes are thought to underlie changes in computation and behavior. The seminal work of Sompolinsky, Crisanti, and Sommers…

Disordered Systems and Neural Networks · Physics 2026-05-15 Carles Martorell , Rubén Calvo , Alessia Annibale , Miguel A. Muñoz

The architecture of a neural network constrains the potential dynamics that can emerge. Some architectures may only allow for a single dynamic regime, while others display a great deal of flexibility with qualitatively different dynamics…

Combinatorics · Mathematics 2020-08-04 Carina Curto , Christopher Langdon , Katherine Morrison

Threshold-linear networks (TLNs) are models of neural networks that consist of simple, perceptron-like neurons and exhibit nonlinear dynamics that are determined by the network's connectivity. The fixed points of a TLN, including both…

Neurons and Cognition · Quantitative Biology 2018-08-06 Carina Curto , Jesse Geneson , Katherine Morrison

Nonlinear network dynamics are notoriously difficult to understand. Here we study a class of recurrent neural networks called combinatorial threshold-linear networks (CTLNs) whose dynamics are determined by the structure of a directed…

Neurons and Cognition · Quantitative Biology 2021-09-16 Daniela Egas Santander , Stefania Ebli , Alice Patania , Nicole Sanderson , Felicia Burtscher , Katherine Morrison , Carina Curto

The presence of synchronized clusters in neuron networks is a hallmark of information transmission and processing. The methods commonly used to study cluster synchronization in networks of coupled oscillators ground on simplifying…

Dynamical Systems · Mathematics 2020-07-09 Matteo Lodi , Fabio Della Rossa , Francesco Sorrentino , Marco Storace

Clustering is the propensity of nodes that share a common neighbour to be connected. It is ubiquitous in many networks but poses many modelling challenges. Clustering typically manifests itself by a higher than expected frequency of…

Dynamical Systems · Mathematics 2016-01-07 Martin Ritchie , Luc Berthouze , Istvan Z. Kiss

In the present work, we introduce a general class of mean-field interacting nonlinear Hawkes processes modelling the reciprocal interactions between two neuronal populations, one excitatory and one inhibitory. The model incorporates two…

Probability · Mathematics 2021-05-25 Céline Duval , Eric Luçon , Christophe Pouzat

Learning the latent network structure from large scale multivariate point process data is an important task in a wide range of scientific and business applications. For instance, we might wish to estimate the neuronal functional…

Methodology · Statistics 2021-01-21 Biao Cai , Jingfei Zhang , Yongtao Guan

How the information microscopically processed by individual neurons is integrated and used in organizing the behavior of an animal is a central question in neuroscience. The coherence of neuronal dynamics over different scales has been…

Disordered Systems and Neural Networks · Physics 2020-03-11 Takashi Hayakawa , Tomoki Fukai

In this work, we study the event occurrences of individuals interacting in a network. To characterize the dynamic interactions among the individuals, we propose a group network Hawkes process (GNHP) model whose network structure is observed…

Methodology · Statistics 2023-08-31 Guanhua Fang , Ganggang Xu , Haochen Xu , Xuening Zhu , Yongtao Guan

We introduce a nonlinear modification of the classical Hawkes process, which allows inhibitory couplings between units without restrictions. The resulting system of interacting point processes provides a useful mathematical model for…

Probability · Mathematics 2009-11-03 Stefano Cardanobile , Stefan Rotter

We analyze zero-lag and cluster synchrony of delay-coupled non-smooth dynamical systems by extending the master stability approach, and apply this to networks of adaptive threshold-model neurons. For a homogeneous population of excitatory…

Adaptation and Self-Organizing Systems · Physics 2013-11-06 Josef Ladenbauer , Judith Lehnert , Hadi Rankoohi , Thomas Dahms , Eckehard Schöll , Klaus Obermayer

We study the stability and information encoding capacity of synchronized states in a neuronal network model that represents part of thalamic circuitry. Our model neurons have a Hodgkin-Huxley-type low threshold Calcium channel, display post…

Statistical Mechanics · Physics 2007-05-23 P. H. E. Tiesinga , Jorge V. José

We propose a framework for constructing combinatorial complexes (CCs) from fMRI time series data that captures both pairwise and higher-order neural interactions through information-theoretic measures, bridging topological deep learning and…

Neurons and Cognition · Quantitative Biology 2026-01-06 Valentina Sánchez , Çiçek Güven , Koen Haak , Theodore Papamarkou , Gonzalo Nápoles , Marie Šafář Postma

Many biological neuronal networks exhibit highly variable spiking activity. Balanced networks offer a parsimonious model of this variability. In balanced networks, strong excitatory synaptic inputs are canceled by strong inhibitory inputs…

Neurons and Cognition · Quantitative Biology 2016-05-04 Ryan Pyle , Robert Rosenbaum
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